diff toolboxes/FullBNT-1.0.7/bnt/CPDs/@hhmmQ_CPD/Old/update_ess2.m @ 0:e9a9cd732c1e tip

first hg version after svn

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolboxes/FullBNT-1.0.7/bnt/CPDs/@hhmmQ_CPD/Old/update_ess2.m	Tue Feb 10 15:05:51 2015 +0000
@@ -0,0 +1,178 @@
+function CPD = update_ess2(CPD, fmarginal, evidence, ns, cnodes, hidden_bitv)
+% UPDATE_ESS Update the Expected Sufficient Statistics of a hhmm Q node.
+% function CPD = update_ess(CPD, fmarginal, evidence, ns, cnodes, idden_bitv)
+
+% Figure out the node numbers associated with each parent
+dom = fmarginal.domain;
+self = dom(end); % by assumption
+old_self = dom(CPD.old_self_ndx);
+Fself = dom(CPD.Fself_ndx);
+Fbelow = dom(CPD.Fbelow_ndx);
+Qps = dom(CPD.Qps_ndx);
+
+Qsz = CPD.Qsz;
+Qpsz = CPD.Qpsz;
+
+
+fmarg = add_ev_to_dmarginal(fmarginal, evidence, ns);
+
+
+
+% hor_counts(old_self, Qps, self),
+% fmarginal(old_self, Fbelow, Fself, Qps, self)
+% hor_counts(i,k,j) = fmarginal(i,2,1,k,j) % below has finished, self has not
+% ver_counts(i,k,j) = fmarginal(i,2,2,k,j) % below has finished, and so has self (reset)
+% Since any of i,j,k may be observed, we write
+% hor_counts(counts_ndx{:}) = fmarginal(fmarg_ndx{:})
+% where e.g., counts_ndx = {1, ':', 2} if Qps is hidden but we observe old_self=1, self=2.
+% To create this counts_ndx, we write counts_ndx = mk_multi_ndx(3, obs_dim, obs_val)
+% where counts_obs_dim = [1 3], counts_obs_val = [1 2] specifies the values of dimensions 1 and 3.
+
+counts_obs_dim = [];
+fmarg_obs_dim = [];
+obs_val = []; 
+if hidden_bitv(self)
+  effQsz = Qsz;
+else
+  effQsz = 1;
+  counts_obs_dim = [counts_obs_dim 3];
+  fmarg_obs_dim = [fmarg_obs_dim 5];
+  obs_val = [obs_val evidence{self}];
+end
+  
+% e.g., D=4, d=3, Qps = all Qs above, so dom = [Q3(t-1) F4(t-1) F3(t-1) Q1(t) Q2(t) Q3(t)].
+% so self = Q3(t), old_self = Q3(t-1), CPD.Qps = [1 2], Qps = [Q1(t) Q2(t)]
+dom = fmarginal.domain;
+self = dom(end);
+old_self = dom(1);
+Qps = dom(length(dom)-length(CPD.Qps):end-1);
+
+Qsz = CPD.Qsizes(CPD.d);
+Qpsz = prod(CPD.Qsizes(CPD.Qps));
+
+% If some of the Q nodes are observed (which happens during supervised training)
+% the counts will only be non-zero in positions
+% consistent with the evidence. We put the computed marginal responsibilities
+% into the appropriate slots of the big counts array.
+% (Recall that observed discrete nodes only have a single effective value.)
+% (A more general, but much slower, way is to call add_evidence_to_dmarginal.)
+% We assume the F nodes are never observed.
+
+obs_self = ~hidden_bitv(self);
+obs_Qps = (~isempty(Qps)) & (~any(hidden_bitv(Qps))); % we assume that all or none of the Q parents are observed
+
+if obs_self
+  self_val = evidence{self};
+  oldself_val = evidence{old_self};
+end
+
+if obs_Qps
+  Qps_val = subv2ind(Qpsz, cat(1, evidence{Qps}));
+  if Qps_val == 0
+    keyboard
+  end
+end
+
+if CPD.d==1 % no Qps from above
+  if ~CPD.F1toQ1 % no F from self
+    % marg(Q1(t-1), F2(t-1), Q1(t))                            
+    % F2(t-1) P(Q1(t)=j | Q1(t-1)=i)
+    % 1       delta(i,j)
+    % 2       transprob(i,j)
+    if obs_self
+      hor_counts = zeros(Qsz, Qsz);
+      hor_counts(oldself_val, self_val) = fmarginal.T(2);
+    else
+      marg = reshape(fmarginal.T, [Qsz 2 Qsz]);
+      hor_counts = squeeze(marg(:,2,:));
+    end
+  else
+    % marg(Q1(t-1), F2(t-1), F1(t-1), Q1(t))                            
+    % F2(t-1) F1(t-1)  P(Qd(t)=j| Qd(t-1)=i)
+    % ------------------------------------------------------
+    % 1        1         delta(i,j)
+    % 2        1         transprob(i,j)
+    % 1        2         impossible
+    % 2        2         startprob(j)
+    if obs_self
+      marg = myreshape(fmarginal.T, [1 2 2 1]);
+      hor_counts = zeros(Qsz, Qsz);
+      hor_counts(oldself_val, self_val) = marg(1,2,1,1);
+      ver_counts = zeros(Qsz, 1);
+      %ver_counts(self_val) = marg(1,2,2,1);
+      ver_counts(self_val) = marg(1,2,2,1) + marg(1,1,2,1);
+    else
+      marg = reshape(fmarginal.T, [Qsz 2 2 Qsz]);
+      hor_counts = squeeze(marg(:,2,1,:));
+      %ver_counts = squeeze(sum(marg(:,2,2,:),1)); % sum over i
+      ver_counts = squeeze(sum(marg(:,2,2,:),1)) + squeeze(sum(marg(:,1,2,:),1)); % sum i,b
+    end
+  end % F1toQ1
+else % d ~= 1
+  if CPD.d < CPD.D % general case
+    % marg(Qd(t-1), Fd+1(t-1), Fd(t-1), Qps(t), Qd(t))                            
+    % Fd+1(t-1) Fd(t-1)  P(Qd(t)=j| Qd(t-1)=i, Qps(t)=k)
+    % ------------------------------------------------------
+    % 1        1         delta(i,j)
+    % 2        1         transprob(i,k,j)
+    % 1        2         impossible
+    % 2        2         startprob(k,j)
+    if obs_Qps & obs_self
+      marg = myreshape(fmarginal.T, [1 2 2 1 1]);
+      k = 1;
+      hor_counts = zeros(Qsz, Qpsz, Qsz);
+      hor_counts(oldself_val, Qps_val, self_val) = marg(1, 2,1, k,1);
+      ver_counts = zeros(Qpsz, Qsz);
+      %ver_counts(Qps_val, self_val) = marg(1, 2,2, k,1);
+      ver_counts(Qps_val, self_val) = marg(1, 2,2, k,1) + marg(1, 1,2, k,1);
+    elseif obs_Qps & ~obs_self
+      marg = myreshape(fmarginal.T, [Qsz 2 2 1 Qsz]);
+      k = 1;
+      hor_counts = zeros(Qsz, Qpsz, Qsz);
+      hor_counts(:, Qps_val, :) = marg(:, 2,1, k,:);
+      ver_counts = zeros(Qpsz, Qsz);
+      %ver_counts(Qps_val, :) = sum(marg(:, 2,2, k,:), 1);
+      ver_counts(Qps_val, :) = sum(marg(:, 2,2, k,:), 1) + sum(marg(:, 1,2, k,:), 1);
+    elseif ~obs_Qps & obs_self
+      error('not yet implemented')
+    else % everything is hidden
+      marg = reshape(fmarginal.T, [Qsz 2 2 Qpsz Qsz]);
+      hor_counts = squeeze(marg(:,2,1,:,:)); % i,k,j
+      %ver_counts = squeeze(sum(marg(:,2,2,:,:),1)); % sum over i
+      ver_counts = squeeze(sum(marg(:,2,2,:,:),1)) + squeeze(sum(marg(:,1,2,:,:),1)); % sum over i,b
+    end
+  else % d == D, so no F from below
+    % marg(QD(t-1), FD(t-1), Qps(t), QD(t))                            
+    % FD(t-1) P(QD(t)=j | QD(t-1)=i, Qps(t)=k)
+    % 1      transprob(i,k,j) 
+    % 2      startprob(k,j)
+    if obs_Qps & obs_self
+      marg = myreshape(fmarginal.T, [1 2 1 1]);
+      k = 1;
+      hor_counts = zeros(Qsz, Qpsz, Qsz);
+      hor_counts(oldself_val, Qps_val, self_val) = marg(1, 1, k,1);
+      ver_counts = zeros(Qpsz, Qsz);
+      ver_counts(Qps_val, self_val) = marg(1, 2, k,1);
+    elseif obs_Qps & ~obs_self
+      marg = myreshape(fmarginal.T, [Qsz 2 1 Qsz]);
+      k = 1;
+      hor_counts = zeros(Qsz, Qpsz, Qsz);
+      hor_counts(:, Qps_val, :) = marg(:, 1, k,:);
+      ver_counts = zeros(Qpsz, Qsz);
+      ver_counts(Qps_val, :) = sum(marg(:, 2, k, :), 1);
+    elseif ~obs_Qps & obs_self
+      error('not yet implemented')
+    else % everything is hidden
+      marg = reshape(fmarginal.T, [Qsz 2 Qpsz Qsz]);
+      hor_counts = squeeze(marg(:,1,:,:));
+      ver_counts = squeeze(sum(marg(:,2,:,:),1)); % sum over i
+    end
+  end
+end
+
+CPD.sub_CPD_trans = update_ess_simple(CPD.sub_CPD_trans, hor_counts);
+
+if ~isempty(CPD.sub_CPD_start)
+  CPD.sub_CPD_start = update_ess_simple(CPD.sub_CPD_start, ver_counts);
+end
+