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comparison toolboxes/FullBNT-1.0.7/docs/bnsoftOld.html @ 0:e9a9cd732c1e tip
first hg version after svn
| author | wolffd |
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| date | Tue, 10 Feb 2015 15:05:51 +0000 |
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| 1 <head> | |
| 2 <TITLE>Software Packages for Graphical Models / Bayesian Networks</TITLE> | |
| 3 </head> | |
| 4 | |
| 5 <body> | |
| 6 | |
| 7 <h1> | |
| 8 Software Packages for Graphical Models / Bayesian Networks | |
| 9 </h1> | |
| 10 <p> | |
| 11 Written by Kevin Murphy. | |
| 12 <br> | |
| 13 Last updated 31 October 2005. | |
| 14 | |
| 15 <h3>Remarks</h3> | |
| 16 <ul> | |
| 17 | |
| 18 <li> | |
| 19 A much more detailed comparison of some of these software packages is | |
| 20 available from Appendix B of | |
| 21 <a href="http://www.csse.monash.edu.au/bai/">Bayesian AI</a>, by | |
| 22 Ann Nicholson and Kevin Korb. | |
| 23 This appendix is | |
| 24 available | |
| 25 <a | |
| 26 href="http://www.csse.monash.edu.au/bai/book/appendix_b.pdf">here</a>, | |
| 27 and is based on the online comparison below. | |
| 28 | |
| 29 <li> | |
| 30 An online <a | |
| 31 href="http://servasi.insa-rouen.fr/enseignement/siteUV/rna/BNT/software.html">French | |
| 32 version</a> of this page is also available (not necessarily up-to-date). | |
| 33 | |
| 34 <!-- | |
| 35 <li> | |
| 36 Matt Turk has made a | |
| 37 <a href="http://ilab.cs.ucsb.edu/BayesNets/Bayesia_Software.pdf">pdf | |
| 38 version of this page</a> (not necessarily up-to-date) with some extra | |
| 39 comments on the packages. | |
| 40 --> | |
| 41 <!-- | |
| 42 <br> | |
| 43 (He also has a | |
| 44 <a href="http://ilab.cs.ucsb.edu/BayesNets">cached copy</a> of several of | |
| 45 the packages listed below, which you can look at if links are down.) | |
| 46 --> | |
| 47 | |
| 48 </ul> | |
| 49 | |
| 50 <h3>What do the headers in the table mean?</h3> | |
| 51 | |
| 52 <ul> | |
| 53 <li> Src = source code included? (N=no) If so, what language? | |
| 54 | |
| 55 <li> API = application program interface included? | |
| 56 (N means the program cannot be integrated into your code, i.e., it | |
| 57 must be run as a standalone executable.) | |
| 58 | |
| 59 <li> Exec = Executable runs on W = Windows (95/98/NT), U = Unix, M = | |
| 60 Mac, or - = any machine with a compiler. | |
| 61 | |
| 62 <li> Cts = are continuous (latent) nodes supported? | |
| 63 G = (conditionally) Gaussians nodes supported analytically, | |
| 64 Cs = continuous nodes supported by sampling, | |
| 65 Cd = continuous nodes supported by discretization, | |
| 66 Cx = continuous nodes supported by some unspecified method, | |
| 67 D = only discrete nodes supported. | |
| 68 | |
| 69 | |
| 70 <li> GUI = Graphical User Interface included? | |
| 71 | |
| 72 <li> Learns parameters? | |
| 73 | |
| 74 <li> Learns structure? CI = means uses conditional independency tests | |
| 75 | |
| 76 <!-- | |
| 77 <li> Sample = sampling methods (e.g., likelihood weighting, MCMC) supported? | |
| 78 --> | |
| 79 | |
| 80 <li> Utility = utility and decision nodes (i.e., influence diagrams) | |
| 81 supported? | |
| 82 | |
| 83 <li> Free? | |
| 84 0 = free (although possibly only for academic use). | |
| 85 $ = commercial software (although most have free versions | |
| 86 which are restricted in | |
| 87 various ways, e.g., the model size is limited, or models cannot be | |
| 88 saved, or there is no API.) | |
| 89 | |
| 90 | |
| 91 <li> Undir? | |
| 92 What kind of graphs are supported? | |
| 93 U = only undirected graphs, | |
| 94 D = only directed graphs, | |
| 95 UD = both undirected and directed, | |
| 96 CG = chain graphs (mixed directed/undirected). | |
| 97 | |
| 98 | |
| 99 <li> Inference = which inference algorithm is used? | |
| 100 jtree = junction tree, | |
| 101 varelim = variable (bucket) elimination, | |
| 102 MH = Metropols Hastings, | |
| 103 G = Gibbs sampling, | |
| 104 IS = importance sampling, | |
| 105 sampling = some other Monte Carlo method, | |
| 106 polytree = Pearl's algorithm restricted to a graph with no cycles, | |
| 107 none = no inference supported (hence the program is only designed for | |
| 108 structure learning from completely observed data) | |
| 109 | |
| 110 <li> Comments. | |
| 111 If in "quotes", I am quoting the authors at their request. | |
| 112 | |
| 113 </ul> | |
| 114 | |
| 115 | |
| 116 | |
| 117 <!-- | |
| 118 The following table is automatically generated as follows | |
| 119 bnsoft_to_html.pl < bnsoft.txt > ! soft.html | |
| 120 Then soft.html is inserted and the last line is tidied up. | |
| 121 --> | |
| 122 | |
| 123 <table border> | |
| 124 <tr> | |
| 125 <td> Name | |
| 126 <td> Authors | |
| 127 <td> Src | |
| 128 <td> API | |
| 129 <td> Exec | |
| 130 <td> Cts | |
| 131 <td> GUI | |
| 132 <td> Params | |
| 133 <td> Struct | |
| 134 <td> Utility | |
| 135 <td> Free | |
| 136 <td> Undir | |
| 137 <td> Inference | |
| 138 <td> Comments | |
| 139 | |
| 140 | |
| 141 <tr> | |
| 142 <td> <!--Name--> <a href=http://www.agenarisk.com > AgenaRisk</a> | |
| 143 <td> <!--Authors-->Agena | |
| 144 <td> <!--Src-->N | |
| 145 <td> <!--API-->Y | |
| 146 <td> <!--Exec-->W,U | |
| 147 <td> <!--Cts-->Cx | |
| 148 <td> <!--GUI-->Y | |
| 149 <td> <!--Params-->Y | |
| 150 <td> <!--Struct-->N | |
| 151 <td> <!--Utility-->N | |
| 152 <td> <!--Free-->$ | |
| 153 <td> <!--Undir-->D | |
| 154 <td> <!--Inference-->JTree | |
| 155 <td> <!--Comments-->Simulation by Dynamic discretisation | |
| 156 | |
| 157 <tr> | |
| 158 <td> <!--Name--> <a href=http://www.lumina.com > Analytica</a> | |
| 159 <td> <!--Authors-->Lumina | |
| 160 <td> <!--Src-->N | |
| 161 <td> <!--API-->Y | |
| 162 <td> <!--Exec-->W,M | |
| 163 <td> <!--Cts-->G | |
| 164 <td> <!--GUI-->Y | |
| 165 <td> <!--Params-->N | |
| 166 <td> <!--Struct-->N | |
| 167 <td> <!--Utility-->Y | |
| 168 <td> <!--Free-->$ | |
| 169 <td> <!--Undir-->D | |
| 170 <td> <!--Inference-->sampling | |
| 171 <td> <!--Comments-->spread sheet compatible | |
| 172 | |
| 173 <tr> | |
| 174 <td> <!--Name--> <a href=http://www.cs.duke.edu/~amink/software/banjo/> Banjo</a> | |
| 175 <td> <!--Authors-->Hartemink | |
| 176 <td> <!--Src-->Java | |
| 177 <td> <!--API-->Y | |
| 178 <td> <!--Exec-->W,U,M | |
| 179 <td> <!--Cts-->Cd | |
| 180 <td> <!--GUI-->N | |
| 181 <td> <!--Params-->N | |
| 182 <td> <!--Struct-->Y | |
| 183 <td> <!--Utility-->N | |
| 184 <td> <!--Free-->0 | |
| 185 <td> <!--Undir-->D | |
| 186 <td> <!--Inference-->none | |
| 187 <td> <!--Comments--> structure learning of | |
| 188 static or dynamic networks of discrete variables | |
| 189 | |
| 190 | |
| 191 <tr> | |
| 192 <td><a href=http://www.cs.Helsinki.FI/research/fdk/bassist/> Bassist</a> | |
| 193 <td> U. Helsinki | |
| 194 <td> C++ | |
| 195 <td> Y | |
| 196 <td> U | |
| 197 <td> G | |
| 198 <td> N | |
| 199 <td> Y | |
| 200 <td> N | |
| 201 <td> N | |
| 202 <td> 0 | |
| 203 <td> D | |
| 204 <td> MH | |
| 205 <td> Generates C++ for MCMC. | |
| 206 | |
| 207 <tr> | |
| 208 <td><a href=http://www.cs.Helsinki.FI/research/cosco/Projects/NONE/SW/ > Bayda</a> | |
| 209 <td> U. Helsinki | |
| 210 <td> Java | |
| 211 <td> Y | |
| 212 <td> WUM | |
| 213 <td> G | |
| 214 <td> Y | |
| 215 <td> Y | |
| 216 <td> N | |
| 217 <td> N | |
| 218 <td> 0 | |
| 219 <td> D | |
| 220 <td> ? | |
| 221 <td> Bayesian Naive Bayes classifier. | |
| 222 | |
| 223 <tr> | |
| 224 <td><a href=http://www.mbfys.kun.nl/snn/Research/bayesbuilder/ > BayesBuilder</a> | |
| 225 <td> Nijman (U. Nijmegen) | |
| 226 <td> N | |
| 227 <td> N | |
| 228 <td> W | |
| 229 <td> D | |
| 230 <td> Y | |
| 231 <td> N | |
| 232 <td> N | |
| 233 <td> N | |
| 234 <td> 0 | |
| 235 <td> D | |
| 236 <td> ? | |
| 237 <td> - | |
| 238 | |
| 239 <tr> | |
| 240 <td> <!--Name--> <a | |
| 241 href="http://www.bayesia.com">BayesiaLab</a> | |
| 242 <td> <!--Authors-->Bayesia Ltd | |
| 243 <td> <!--Src-->N | |
| 244 <td> <!--API-->N | |
| 245 <td> <!--Exec-->- | |
| 246 <td> <!--Cts-->Cd | |
| 247 <td> <!--GUI-->Y | |
| 248 <td> <!--Params-->Y | |
| 249 <td> <!--Struct-->Y | |
| 250 <td> <!--Utility-->N | |
| 251 <td> <!--Free-->$ | |
| 252 <td> <!--Undir-->CG | |
| 253 <td> <!--Inference-->jtree,G | |
| 254 <td> <!--Comments--> | |
| 255 <!-- | |
| 256 Structural learning (association discovery, | |
| 257 classification), Bayesian clustering with analysis report generation, | |
| 258 missing values | |
| 259 processing, essential graphs, analysis toolbox, adaptive | |
| 260 questionnaires, dynamic models | |
| 261 --> | |
| 262 Structural learning, adaptive | |
| 263 questionnaires, dynamic models | |
| 264 | |
| 265 | |
| 266 | |
| 267 | |
| 268 <tr> | |
| 269 | |
| 270 <td><a href=http://www.bayesware.com>Bayesware Discoverer</a> | |
| 271 <td> Bayesware | |
| 272 <td> N | |
| 273 <td> N | |
| 274 <td> WUM | |
| 275 <td> Cd | |
| 276 <td> Y | |
| 277 <td> Y | |
| 278 <td> Y | |
| 279 <td> N | |
| 280 <td> $ | |
| 281 <td> D | |
| 282 <td> ? | |
| 283 <td> Uses bound and collapse for learning with missing data. | |
| 284 | |
| 285 <tr> | |
| 286 <td><a href=http://B-Course.hiit.fi/> B-course</a> | |
| 287 <td> U. Helsinki | |
| 288 <td> N | |
| 289 <td> N | |
| 290 <td> WUM | |
| 291 <td> Cd | |
| 292 <td> Y | |
| 293 <td> Y | |
| 294 <td> Y | |
| 295 <td> N | |
| 296 <td> 0 | |
| 297 <td> D | |
| 298 <td> ? | |
| 299 <td> Runs on their server: view results using a web browser. | |
| 300 | |
| 301 <!-- | |
| 302 <tr> | |
| 303 <td><a href="http://www.aist.go.jp/ETL/etl/suri/motomura/BN/bn-java.html">Bayonnet</a> | |
| 304 <td> Motomura (ETL) | |
| 305 <td> Java | |
| 306 <td> Y | |
| 307 <td> WUM | |
| 308 <td> NN | |
| 309 <td> Cx | |
| 310 <td> Y | |
| 311 <td> N | |
| 312 <td> N | |
| 313 <td> 0 | |
| 314 <td> D | |
| 315 <td> ? | |
| 316 <td> For learning, represents BN as a neural net. | |
| 317 --> | |
| 318 | |
| 319 <tr> | |
| 320 <td><a href=http://www.cs.ualberta.ca/~jcheng/bnpc.htm > Belief net power constructor</a> | |
| 321 <td> Cheng (U.Alberta) | |
| 322 <td> N | |
| 323 <td> W | |
| 324 <td> W | |
| 325 <td> D | |
| 326 <td> Y | |
| 327 <td> Y | |
| 328 <td> CI | |
| 329 <td> N | |
| 330 <td> 0 | |
| 331 <td> D | |
| 332 <td> ? | |
| 333 <td> - | |
| 334 | |
| 335 <tr> | |
| 336 <td><a href=http://www.cs.berkeley.edu/~murphyk/Bayes/bnt.html > BNT</a> | |
| 337 <td> Murphy (U.C.Berkeley) | |
| 338 <td> Matlab/C | |
| 339 <td> Y | |
| 340 <td> WUM | |
| 341 <td> G | |
| 342 <td> N | |
| 343 <td> Y | |
| 344 <td> Y | |
| 345 <td> Y | |
| 346 <td> 0 | |
| 347 <td> D,U | |
| 348 <td> Many | |
| 349 <td> Also handles dynamic models, like HMMs and Kalman filters. | |
| 350 | |
| 351 | |
| 352 <tr> | |
| 353 <td> <!--Name--> <a href="http://bndev.sourceforge.net/">BNJ</a> | |
| 354 <td> <!--Authors-->Hsu (Kansas) | |
| 355 <td> <!--Src-->Java | |
| 356 <td> <!--API-->- | |
| 357 <td> <!--Exec-->- | |
| 358 <td> <!--Cts-->D | |
| 359 <td> <!--GUI-->Y | |
| 360 <td> <!--Params-->N | |
| 361 <td> <!--Struct-->Y | |
| 362 <td> <!--Utility-->N | |
| 363 <td> <!--Free-->0 | |
| 364 <td> <!--Undir-->D | |
| 365 <td> <!--Inference-->jtree, IS | |
| 366 <td> <!--Comments-->- | |
| 367 | |
| 368 <!-- | |
| 369 <tr> | |
| 370 <td><a href=http://94.parkview-court.net/project/ > BN Toolkit</a> | |
| 371 <td> Gowans (Imperial) | |
| 372 <td> Visual Basic | |
| 373 <td> Y | |
| 374 <td> W | |
| 375 <td> D | |
| 376 <td> Y | |
| 377 <td> N | |
| 378 <td> Y | |
| 379 <td> N | |
| 380 <td> 0 | |
| 381 <td> D | |
| 382 <td> Polytree | |
| 383 <td> Parser and GUI for the XML-BIF format. | |
| 384 --> | |
| 385 | |
| 386 <tr> | |
| 387 <td><a href=http://www.ics.uci.edu/~irinar > BucketElim</a> | |
| 388 <td> Rish (U.C.Irvine) | |
| 389 <td> C++ | |
| 390 <td> Y | |
| 391 <td> WU | |
| 392 <td> D | |
| 393 <td> N | |
| 394 <td> N | |
| 395 <td> N | |
| 396 <td> N | |
| 397 <td> 0 | |
| 398 <td> D | |
| 399 <td> Varelim | |
| 400 <td> - | |
| 401 | |
| 402 <tr> | |
| 403 <td><a href=http://www.mrc-bsu.cam.ac.uk/bugs > BUGS</a> | |
| 404 <td> MRC/Imperial College | |
| 405 <td> N | |
| 406 <td> N | |
| 407 <td> WU | |
| 408 <td> Cs | |
| 409 <td> W | |
| 410 <td> Y | |
| 411 <td> N | |
| 412 <td> N | |
| 413 <td> 0 | |
| 414 <td> D | |
| 415 <td> Gibbs | |
| 416 <td> - | |
| 417 | |
| 418 <tr> | |
| 419 <td><a href=http://www.data-digest.com > Business Navigator 5</a> | |
| 420 <td> Data Digest Corp | |
| 421 <td> N | |
| 422 <td> N | |
| 423 <td> W | |
| 424 <td> Cd | |
| 425 <td> Y | |
| 426 <td> Y | |
| 427 <td> Y | |
| 428 <td> N | |
| 429 <td> $ | |
| 430 <td> D | |
| 431 <td> Jtree | |
| 432 <td> - | |
| 433 | |
| 434 <tr> | |
| 435 <td><a href=http://www-pcd.stanford.edu/cousins/caben-1.1.tar.gz > CABeN</a> | |
| 436 <td> Cousins et al. (Wash. U.) | |
| 437 <td> C | |
| 438 <td> Y | |
| 439 <td> WU | |
| 440 <td> D | |
| 441 <td> N | |
| 442 <td> N | |
| 443 <td> N | |
| 444 <td> N | |
| 445 <td> 0 | |
| 446 <td> D | |
| 447 <td> 5 Sampling methods | |
| 448 <td> - | |
| 449 | |
| 450 <tr> | |
| 451 <td> <!--Name--> <a href= | |
| 452 http://discover1.mc.vanderbilt.edu/discover/public/>Causal discoverer</a> | |
| 453 <td> <!--Authors-->Vanderbilt | |
| 454 <td> <!--Src-->N | |
| 455 <td> <!--API-->N | |
| 456 <td> <!--Exec-->W | |
| 457 <td> <!--Cts-->- | |
| 458 <td> <!--GUI-->- | |
| 459 <td> <!--Params-->N | |
| 460 <td> <!--Struct-->Y | |
| 461 <td> <!--Utility-->N | |
| 462 <td> <!--Free-->0 | |
| 463 <td> <!--Undir-->D | |
| 464 <td> <!--Inference-->- | |
| 465 <td> <!--Comments-->structure learning only | |
| 466 | |
| 467 | |
| 468 <tr> | |
| 469 <td><a href=http://www.math.auc.dk/~jhb/CoCo/information.html > CoCo+Xlisp</a> | |
| 470 <td> Badsberg (U. Aalborg) | |
| 471 <td> C/lisp | |
| 472 <td> Y | |
| 473 <td> U | |
| 474 <td> D | |
| 475 <td> Y | |
| 476 <td> Y | |
| 477 <td> CI | |
| 478 <td> N | |
| 479 <td> 0 | |
| 480 <td> U | |
| 481 <td> Jtree | |
| 482 <td> Designed for contingency tables. | |
| 483 | |
| 484 <tr> | |
| 485 <td><a href=http://www.cs.ubc.ca/labs/lci/CIspace/ > CIspace</a> | |
| 486 <td> Poole et al. (UBC) | |
| 487 <td> Java | |
| 488 <td> N | |
| 489 <td> WU | |
| 490 <td> D | |
| 491 <td> Y | |
| 492 <td> N | |
| 493 <td> N | |
| 494 <td> N | |
| 495 <td> 0 | |
| 496 <td> D | |
| 497 <td> Varelim | |
| 498 <td> - | |
| 499 | |
| 500 <tr> | |
| 501 <td> <!--Name--> <a href="http://www.robots.ox.ac.uk/~parg/software.html">DBNbox</a> | |
| 502 <td> <!--Authors-->Roberts et al | |
| 503 <td> <!--Src-->Matlab | |
| 504 <td> <!--API-->- | |
| 505 <td> <!--Exec-->- | |
| 506 <td> <!--Cts-->Y | |
| 507 <td> <!--GUI-->N | |
| 508 <td> <!--Params-->Y | |
| 509 <td> <!--Struct-->N | |
| 510 <td> <!--Utility-->N | |
| 511 | |
| 512 <td> <!--Free-->Y | |
| 513 <td> <!--Undir-->D | |
| 514 <td> <!--Inference-->Various | |
| 515 <td> <!--Comments-->DBNs | |
| 516 | |
| 517 <tr> | |
| 518 <td> <!--Name--><a href=http://www.math.auc.dk/novo/deal>Deal</a> | |
| 519 <td> <!--Authors-->Bottcher et al | |
| 520 <td> <!--Src-->R | |
| 521 <td> <!--API-->- | |
| 522 <td> <!--Exec-->- | |
| 523 <td> <!--Cts-->G | |
| 524 <td> <!--GUI-->Y | |
| 525 <td> <!--Params-->Y | |
| 526 <td> <!--Struct-->Y | |
| 527 <td> <!--Utility-->N | |
| 528 <td> <!--Free-->0 | |
| 529 <td> <!--Undir-->D | |
| 530 <td> <!--Inference-->None | |
| 531 <td> <!--Comments--> | |
| 532 Structure learning. | |
| 533 | |
| 534 <tr> | |
| 535 <td><a href=http://www.deriveit.com >DeriveIt</a> | |
| 536 <td> <!--Authors-->DeriveIt LLC | |
| 537 <td> <!--Src-->N | |
| 538 <td> <!--API-->- | |
| 539 <td> <!--Exec-->- | |
| 540 <td> <!--Cts-->? | |
| 541 <td> <!--GUI-->? | |
| 542 <td> <!--Params-->Y | |
| 543 <td> <!--Struct-->Y | |
| 544 <td> <!--Utility-->? | |
| 545 <td> <!--Free-->$ | |
| 546 <td> <!--Undir-->D | |
| 547 <td> <!--Inference-->Jtree | |
| 548 <td> <!--Comments--> | |
| 549 Exploits local structure in CPDs. | |
| 550 | |
| 551 | |
| 552 <tr> | |
| 553 <td><a href=http://www.noeticsystems.com>Ergo</> | |
| 554 <td> <!--Authors-->Noetic systems | |
| 555 <td> <!--Src-->N | |
| 556 <td> <!--API-->Y | |
| 557 <td> <!--Exec-->W,M | |
| 558 <td> <!--Cts-->D | |
| 559 <td> <!--GUI-->Y | |
| 560 <td> <!--Params-->N | |
| 561 <td> <!--Struct-->N | |
| 562 <td> <!--Utility-->N | |
| 563 <td> <!--Free-->$ | |
| 564 <td> <!--Undir-->D | |
| 565 <td> <!--Inference-->jtree | |
| 566 <td> <!--Comments-->- | |
| 567 | |
| 568 <!-- | |
| 569 <tr> | |
| 570 <td><a href=http://www.ens-lyon.fr/~jnarboux/Floue/index.html>FLoUE/BIFtoN</a> | |
| 571 <td> ENS Lyon | |
| 572 <td> Java | |
| 573 <td> Y | |
| 574 <td> WUM | |
| 575 <td> D | |
| 576 <td> N | |
| 577 <td> N | |
| 578 <td> N | |
| 579 <td> N | |
| 580 <td> 0 | |
| 581 <td> D | |
| 582 <td> Jtree | |
| 583 <td> - | |
| 584 --> | |
| 585 | |
| 586 <tr> | |
| 587 <td><a href=http://www.staff.ncl.ac.uk/d.j.wilkinson/software/gdagsim/ > GDAGsim</a> | |
| 588 <td> Wilkinson (U. Newcastle) | |
| 589 <td> C | |
| 590 <td> Y | |
| 591 <td> WUM | |
| 592 <td> G | |
| 593 <td> N | |
| 594 <td> N | |
| 595 <td> N | |
| 596 <td> N | |
| 597 <td> 0 | |
| 598 <td> D | |
| 599 <td> Exact | |
| 600 <td> Bayesian analysis of large linear Gaussian directed models. | |
| 601 | |
| 602 | |
| 603 <tr> | |
| 604 <td><a href=http://www2.sis.pitt.edu/~genie > Genie</a> | |
| 605 <td> U. Pittsburgh | |
| 606 <td> N | |
| 607 <td> WU | |
| 608 <td> WU | |
| 609 <td> D | |
| 610 <td> W | |
| 611 <td> N | |
| 612 <td> N | |
| 613 <td> Y | |
| 614 <td> 0 | |
| 615 <td> D | |
| 616 <td> Jtree | |
| 617 <td> - | |
| 618 | |
| 619 <tr> | |
| 620 <td><a href=http://www.math.ntnu.no/~hrue/GMRFsim/ > GMRFsim</a> | |
| 621 <td> Rue (U. Trondheim) | |
| 622 <td> C | |
| 623 <td> Y | |
| 624 <td> WUM | |
| 625 <td> G | |
| 626 <td> N | |
| 627 <td> N | |
| 628 <td> N | |
| 629 <td> N | |
| 630 <td> 0 | |
| 631 <td> U | |
| 632 <td> MCMC | |
| 633 <td> Bayesian analysis of large linear Gaussian undirected models. | |
| 634 | |
| 635 | |
| 636 <tr> | |
| 637 <td> <!--Name--> <a href=http://ssli.ee.washington.edu/~bilmes/gmtk/>GMTk</a> | |
| 638 <td> <!--Authors-->Bilmes (UW), Zweig (IBM) | |
| 639 <td> <!--Src-->N | |
| 640 <td> <!--API-->Y | |
| 641 <td> <!--Exec-->U | |
| 642 <td> <!--Cts-->D | |
| 643 <td> <!--GUI-->N | |
| 644 <td> <!--Params-->Y | |
| 645 <td> <!--Struct-->Y | |
| 646 <td> <!--Utility-->N | |
| 647 <td> <!--Free-->0 | |
| 648 <td> <!--Undir-->D | |
| 649 <td> <!--Inference-->Jtree | |
| 650 <td> <!--Comments--> | |
| 651 Designed for speech recognition. | |
| 652 | |
| 653 <tr> | |
| 654 <td> <!--Name--> <a href=http://www.r-project.org/gR>gR</a> | |
| 655 <td> <!--Authors-->Lauritzen et al. | |
| 656 <td> <!--Src-->R | |
| 657 <td> <!--API-->- | |
| 658 <td> <!--Exec-->- | |
| 659 <td> <!--Cts-->- | |
| 660 <td> <!--GUI-->- | |
| 661 <td> <!--Params-->- | |
| 662 <td> <!--Struct-->- | |
| 663 <td> <!--Utility-->- | |
| 664 <td> <!--Free-->0 | |
| 665 <td> <!--Undir-->- | |
| 666 <td> <!--Inference-->- | |
| 667 <td> <!--Comments-->Currently vaporware | |
| 668 | |
| 669 | |
| 670 <tr> | |
| 671 <td> <!--Name--> <a href=http://www.stats.bris.ac.uk/~peter/Grappa/>Grappa</a> | |
| 672 <td> <!--Authors-->Green (Bristol) | |
| 673 <td> <!--Src-->R | |
| 674 <td> <!--API-->- | |
| 675 <td> <!--Exec-->- | |
| 676 <td> <!--Cts-->D | |
| 677 <td> <!--GUI-->N | |
| 678 <td> <!--Params-->N) | |
| 679 <td> <!--Struct-->N | |
| 680 <td> <!--Utility-->N | |
| 681 <td> <!--Free-->0 | |
| 682 <td> <!--Undir-->D | |
| 683 <td> <!--Inference-->Jtree | |
| 684 <td> <!--Comments-->- | |
| 685 | |
| 686 | |
| 687 <tr> | |
| 688 <td><a href=http://www.hugin.com > Hugin Expert</a> | |
| 689 <td> Hugin | |
| 690 <td> N | |
| 691 <td> Y | |
| 692 <td> W | |
| 693 <td> G | |
| 694 <td> W | |
| 695 <td> Y | |
| 696 <td> CI | |
| 697 <td> Y | |
| 698 <td> $ | |
| 699 <td> CG | |
| 700 <td> Jtree | |
| 701 <td> - | |
| 702 | |
| 703 | |
| 704 <tr> | |
| 705 <td> <!--Name--> <a href=http://www.warnes.net/GregsSoftwareLinks/index_html?Tab=MCMC>Hydra</a> | |
| 706 <td> <!--Authors-->Warnes (U.Wash.) | |
| 707 <td> <!--Src-->Java | |
| 708 <td> <!--API-->- | |
| 709 <td> <!--Exec-->- | |
| 710 <td> <!--Cts-->Cs | |
| 711 <td> <!--GUI-->Y | |
| 712 <td> <!--Params-->Y | |
| 713 <td> <!--Struct-->N | |
| 714 <td> <!--Utility-->N | |
| 715 <td> <!--Free-->0 | |
| 716 <td> <!--Undir-->U,D | |
| 717 <td> <!--Inference-->MCMC | |
| 718 <td> <!--Comments-->- | |
| 719 | |
| 720 | |
| 721 <tr> | |
| 722 <!-- http://www.rpal.rockwell.com/ideal.html --> | |
| 723 <td><a href=http://yoda.cis.temple.edu:8080/ideal>Ideal</a> | |
| 724 <td> Rockwell | |
| 725 <td> Lisp | |
| 726 <td> Y | |
| 727 <td> WUM | |
| 728 <td> D | |
| 729 <td> Y | |
| 730 <td> N | |
| 731 <td> N | |
| 732 <td> Y | |
| 733 <td> 0 | |
| 734 <td> D | |
| 735 <td> Jtree | |
| 736 <td> GUI requires Allegro Lisp. | |
| 737 | |
| 738 <tr> | |
| 739 <td><a href=http://www.cs.cmu.edu/~javabayes/Home/ > Java Bayes</a> | |
| 740 <td> Cozman (CMU) | |
| 741 <td> Java | |
| 742 <td> Y | |
| 743 <td> WUM | |
| 744 <td> D | |
| 745 <td> Y | |
| 746 <td> N | |
| 747 <td> N | |
| 748 <td> Y | |
| 749 <td> 0 | |
| 750 <td> D | |
| 751 <td> Varelim, jtree | |
| 752 <td> - | |
| 753 | |
| 754 | |
| 755 <tr> | |
| 756 <td> <!--Name--><a href="http://www.codeas.com/kbaseai.php" >KBaseAI</a> | |
| 757 <td> <!--Authors-->Codeas | |
| 758 <td> <!--Src-->N | |
| 759 <td> <!--API-->Y | |
| 760 <td> <!--Exec-->W,U | |
| 761 <td> <!--Cts-->D | |
| 762 <td> <!--GUI-->N | |
| 763 <td> <!--Params-->N | |
| 764 <td> <!--Struct-->N | |
| 765 <td> <!--Utility-->N | |
| 766 <td> <!--Free-->$ | |
| 767 <td> <!--Undir-->D | |
| 768 <td> <!--Inference-->varelim | |
| 769 <td> <!--Comments-->client/server architecture, multiple users, access | |
| 770 control, query language | |
| 771 | |
| 772 | |
| 773 <tr> | |
| 774 <td> <!--Name--> <a href=http://www.cs.huji.ac.il/labs/compbio/LibB>LibB</a> | |
| 775 <td> <!--Authors-->Friedman (Hebrew U) | |
| 776 <td> <!--Src-->N | |
| 777 <td> <!--API-->Y | |
| 778 <td> <!--Exec-->W | |
| 779 <td> <!--Cts-->D | |
| 780 <td> <!--GUI-->N | |
| 781 <td> <!--Params-->Y | |
| 782 <td> <!--Struct-->Y | |
| 783 <td> <!--Utility-->N | |
| 784 <td> <!--Free-->0 | |
| 785 <td> <!--Undir-->D | |
| 786 <td> <!--Inference-->none | |
| 787 <td> <!--Comments--> | |
| 788 Structure learning | |
| 789 | |
| 790 <tr> | |
| 791 <td><a href=http://www.hypergraph.dk/ > MIM</a> | |
| 792 <td> HyperGraph Software | |
| 793 <td> N | |
| 794 <td> N | |
| 795 <td> W | |
| 796 <td> G | |
| 797 <td> Y | |
| 798 <td> Y | |
| 799 <td> Y | |
| 800 <td> N | |
| 801 <td> $ | |
| 802 <td> CG | |
| 803 <td> Jtree | |
| 804 <td> Up to 52 variables. | |
| 805 | |
| 806 <tr> | |
| 807 <td><a href=http://research.microsoft.com/adapt/MSBNx/ > MSBNx</a> | |
| 808 <td> Microsoft | |
| 809 <td> N | |
| 810 <td> Y | |
| 811 <td> W | |
| 812 <td> D | |
| 813 <td> W | |
| 814 <td> N | |
| 815 <td> N | |
| 816 <td> Y | |
| 817 <td> 0 | |
| 818 <td> D | |
| 819 <td> Jtree | |
| 820 <td> - | |
| 821 | |
| 822 <tr> | |
| 823 <td><a href=http://www.norsys.com > Netica</a> | |
| 824 <td> Norsys | |
| 825 <td> N | |
| 826 <td> WUM | |
| 827 <td> W | |
| 828 <td> G | |
| 829 <td> W | |
| 830 <td> Y | |
| 831 <td> N | |
| 832 <td> Y | |
| 833 <td> $ | |
| 834 <td> D | |
| 835 <td> jtree | |
| 836 <td> - | |
| 837 | |
| 838 <tr> | |
| 839 <td> <!--Name--> <a href="http://www.autonlab.org/autonweb/showSoftware/149/">Optimal | |
| 840 Reinsertion</a> | |
| 841 <td> <!--Authors-->Moore, Wong (CMU) | |
| 842 <td> <!--Src-->N | |
| 843 <td> <!--API-->N | |
| 844 <td> <!--Exec-->W,U | |
| 845 <td> <!--Cts-->D | |
| 846 <td> <!--GUI-->N | |
| 847 <td> <!--Params-->Y | |
| 848 <td> <!--Struct-->Y | |
| 849 <td> <!--Utility-->N | |
| 850 <td> <!--Free-->0 | |
| 851 <td> <!--Undir-->D | |
| 852 <td> <!--Inference-->none | |
| 853 <td> <!--Comments-->structure learning | |
| 854 | |
| 855 | |
| 856 <tr> | |
| 857 <td> <!--Name--> <a href="http://people.bu.edu/vladimir/pmt/index.html">PMT</a> | |
| 858 <td> <!--Authors-->Pavlovic (BU) | |
| 859 <td> <!--Src-->Matlab/C | |
| 860 <td> <!--API-->- | |
| 861 <td> <!--Exec-->- | |
| 862 <td> <!--Cts-->D | |
| 863 <td> <!--GUI-->N | |
| 864 <td> <!--Params-->Y | |
| 865 <td> <!--Struct-->N | |
| 866 <td> <!--Utility-->N | |
| 867 <td> <!--Free-->0 | |
| 868 <td> <!--Undir-->D | |
| 869 <td> <!--Inference-->special purpose | |
| 870 <td> <!--Comments-->- | |
| 871 | |
| 872 | |
| 873 | |
| 874 <tr> | |
| 875 <td> <!--Name--> <a href=http://www.intel.com/research/mrl/pnl/>PNL</a> | |
| 876 <td> <!--Authors-->Eruhimov (Intel) | |
| 877 <td> <!--Src-->C++ | |
| 878 <td> <!--API-->- | |
| 879 <td> <!--Exec-->- | |
| 880 <td> <!--Cts-->D | |
| 881 <td> <!--GUI-->N | |
| 882 <td> <!--Params-->Y | |
| 883 <td> <!--Struct-->Y | |
| 884 <td> <!--Utility-->N | |
| 885 <td> <!--Free-->0 | |
| 886 <td> <!--Undir-->U,D | |
| 887 <td> <!--Inference-->Jtree | |
| 888 <td> <!--Comments--> | |
| 889 A C++ version of BNT; will be released 12/03. | |
| 890 | |
| 891 | |
| 892 <tr> | |
| 893 <td><a href=http://iridia.ulb.ac.be/pulcinella/Welcome.html > Pulcinella</a> | |
| 894 <td> IRIDIA | |
| 895 <td> Lisp | |
| 896 <td> Y | |
| 897 <td> WUM | |
| 898 <td> D | |
| 899 <td> Y | |
| 900 <td> N | |
| 901 <td> N | |
| 902 <td> N | |
| 903 <td> 0 | |
| 904 <td> D | |
| 905 <td> ? | |
| 906 <td> Uses valuation systems for non-probabilistic calculi. | |
| 907 | |
| 908 <tr> | |
| 909 <!-- http://civil.colorado.edu/~dodier/sonero-mirror/index.html --> | |
| 910 <td><a href=http://sourceforge.net/projects/riso>RISO</a> | |
| 911 <td> Dodier (U.Colorado) | |
| 912 <td> Java | |
| 913 <td> Y | |
| 914 <td> WUM | |
| 915 <td> G | |
| 916 <td> Y | |
| 917 <td> N | |
| 918 <td> N | |
| 919 <td> N | |
| 920 <td> 0 | |
| 921 <td> D | |
| 922 <td> Polytree | |
| 923 <td> Distributed implementation. | |
| 924 | |
| 925 | |
| 926 | |
| 927 <tr> | |
| 928 <td> <!--Name--> <a href=http://reasoning.cs.ucla.edu/samiam/> Sam Iam</a> | |
| 929 <td> <!--Authors-->Darwiche (UCLA) | |
| 930 <td> <!--Src-->N | |
| 931 <td> <!--API-->N ? | |
| 932 <td> <!--Exec-->WU ? (Java executable) | |
| 933 <td> <!--Cts-->G ? | |
| 934 <td> <!--GUI-->Y | |
| 935 <td> <!--Params-->Y | |
| 936 <td> <!--Struct-->N ? | |
| 937 <td> <!--Utility-->Y | |
| 938 <td> <!--Free-->0 | |
| 939 <td> <!--Undir-->D | |
| 940 <td> <!--Inference-->Recursive conditioning | |
| 941 <td> <!--Comments-->Also does sensitivity Analysis | |
| 942 | |
| 943 | |
| 944 <tr> | |
| 945 <td><a href=http://www.phil.cmu.edu/tetrad/>Tetrad</a> | |
| 946 <td> CMU | |
| 947 <td> N | |
| 948 <td> N | |
| 949 <td> WU | |
| 950 <td> G | |
| 951 <td> N | |
| 952 <td> Y | |
| 953 <td> CI | |
| 954 <td> N | |
| 955 <td> 0 | |
| 956 <td> U,D | |
| 957 <td> None | |
| 958 <td> - | |
| 959 | |
| 960 | |
| 961 <tr> | |
| 962 <td> <!--Name--> <a href="https://sourceforge.net/projects/unbbayes/">UnBBayes</a> | |
| 963 <td> <!--Authors-->? | |
| 964 <td> <!--Src-->Java | |
| 965 <td> <!--API-->- | |
| 966 <td> <!--Exec-->- | |
| 967 <td> <!--Cts-->D | |
| 968 <td> <!--GUI-->Y | |
| 969 <td> <!--Params-->N | |
| 970 <td> <!--Struct-->Y | |
| 971 <td> <!--Utility-->N | |
| 972 <td> <!--Free-->0 | |
| 973 <td> <!--Undir-->D | |
| 974 <td> <!--Inference-->jtree | |
| 975 <td> <!--Comments-->K2 for struct learning | |
| 976 | |
| 977 | |
| 978 <tr> | |
| 979 <td><a href=http://www.inference.phy.cam.ac.uk/jmw39/>Vibes</a> | |
| 980 <td> Winn & Bishop (U. Cambridge) | |
| 981 <td> Java | |
| 982 <td> Y | |
| 983 <td> WU | |
| 984 <td> Cx | |
| 985 <td> Y | |
| 986 <td> Y | |
| 987 <td> N | |
| 988 <td> N | |
| 989 <td> 0 | |
| 990 <td> D | |
| 991 <td> Variational | |
| 992 <td> | |
| 993 Not yet available. | |
| 994 | |
| 995 | |
| 996 <tr> | |
| 997 <td><a href=http://snowhite.cis.uoguelph.ca/faculty_info/yxiang/ww3/> Web Weaver</a> | |
| 998 <td> Xiang (U.Regina) | |
| 999 <td> Java | |
| 1000 <td> Y | |
| 1001 <td> WUM | |
| 1002 <td> D | |
| 1003 <td> Y | |
| 1004 <td> N | |
| 1005 <td> N | |
| 1006 <td> Y | |
| 1007 <td> 0 | |
| 1008 <td> D | |
| 1009 <td> ? | |
| 1010 <td> - | |
| 1011 | |
| 1012 <tr> | |
| 1013 <td><a href=http://research.microsoft.com/~dmax/WinMine/tooldoc.htm > WinMine</a> | |
| 1014 <td> Microsoft | |
| 1015 <td> N | |
| 1016 <td> N | |
| 1017 <td> W | |
| 1018 <td> Cx | |
| 1019 <td> Y | |
| 1020 <td> Y | |
| 1021 <td> Y | |
| 1022 <td> N | |
| 1023 <td> 0 | |
| 1024 <td> U,D | |
| 1025 <td> None | |
| 1026 <td> Learns BN or dependency net structure. | |
| 1027 | |
| 1028 <tr> | |
| 1029 <td><a href=http://www.staff.city.ac.uk/~rgc/webpages/xbpage.html > XBAIES 2.0</a> | |
| 1030 <td> Cowell (City U.) | |
| 1031 <td> N | |
| 1032 <td> N | |
| 1033 <td> W | |
| 1034 <td> G | |
| 1035 <td> Y | |
| 1036 <td> Y | |
| 1037 <td> N | |
| 1038 <td> Y | |
| 1039 <td> 0 | |
| 1040 <td> CG | |
| 1041 <td> Jtree | |
| 1042 <td> - | |
| 1043 | |
| 1044 <tr> | |
| 1045 | |
| 1046 </table> | |
| 1047 | |
| 1048 | |
| 1049 <p> | |
| 1050 <h2>Other sites related to (software for) graphical models</h2> | |
| 1051 <ul> | |
| 1052 | |
| 1053 | |
| 1054 <li> | |
| 1055 <a | |
| 1056 href="http://directory.google.com/Top/Computers/Artificial_Intelligence/Belief_Networks/Software/"> | |
| 1057 Google's list</a> of Bayes net software. | |
| 1058 | |
| 1059 <!-- | |
| 1060 <li> <a href="http://www.sis.pitt.edu/~dsl/da-software.html"> | |
| 1061 Decision analysis programs</a>, list maintained by | |
| 1062 Marek Druzdzel. | |
| 1063 --> | |
| 1064 | |
| 1065 <li> <a href="http://www.cs.cmu.edu/~lorens/papers/mscthesis.html"> | |
| 1066 Comparison of decision analysis software packages</a> by | |
| 1067 Håkan L. Younes. The emphasis is on real-time decision making. | |
| 1068 | |
| 1069 <li> <a href="http://bayes.stat.washington.edu/almond/belief.html"> | |
| 1070 Older belief net programs</a> (c 1996), a list created (but no longer maintained) | |
| 1071 by Russ Almond. | |
| 1072 | |
| 1073 <li> | |
| 1074 <a | |
| 1075 href="http://www.cs.huji.ac.il/labs/compbio/Repository"> | |
| 1076 Repository of Bayes nets</a>. | |
| 1077 | |
| 1078 </document> |