comparison toolboxes/FullBNT-1.0.7/bnt/test_BNT.m @ 0:e9a9cd732c1e tip

first hg version after svn

+% If all is well, all of these scripts should run without errors.
+
+
+% bnets
+cg1
+cg2
+discrete1
+fa1
+gaussian1
+gaussian2
+if exist('@gibbs_sampling_inf_engine/private/compute_posterior','file')
+  % only exists if installC has been run
+  gibbs_test1
+end
+learn1
+lw1
+mfa1
+mixexp1
+mixexp2
+mixexp3
+mog1
+mpe1
+mpe2
+qmr1
+qmr2
+sample1
+softev1
+softmax1
+sprinkler1
+
+
+% belief propagation
+belprop_polytree_discrete
+belprop_polytree_gauss % alag
+belprop_polytree_cg
+belprop_loop1_discrete
+belprop_loop1_gauss
+belprop_loopy_discrete
+belprop_loopy_gauss
+belprop_loopy_cg % like cg1
+
+
+% factor graphs
+%fg1   failed since marginals were not exact
+
+fg2
+fg3
+fg_mrf1
+fg_mrf2
+
+
+% Structure learning
+bic1
+cooper_yoo
+k2demo1
+mcmc1
+model_select1
+pc1
+%pc2   failed due to numerical problems in KPMstats/cond_indep_fisher_z
+
+
+
+
+% limids
+asia_dt1
+id1
+oil1
+pigs1
+
+
+% dbns
+arhmm1
+bat1
+bkff1
+chmm1
+dhmm1
+filter_test1
+ghmm1
+kalman1
+kjaerulff1
+loopy_dbn1
+mhmm1
+mildew1
+reveal1
+viterbi1
+water1
+
+
+% HHMMs
+abcd_hhmm
+sample_square_hhmm_discrete
+%learn_square_hhmm_cts
+sample_motif_hhmm
+
+%sparse jtree engine & ndx 2TBN engine
+if exist('@jtree_sparse_inf_engine/init_pot','file')
+  % only exists if installC has been run
+  discrete2
+  discrete3 
+  filter_test1
+  water2
+end
+
+%find . -path '*.m' -exec wc -l {} \; | ~/count.pl
+
+% we cannot use tic;toc to time test_BNT, since functions within this script
+% reset the tic;toc timer. Hence we use the following:
+%clock0=clock; cpu0 = cputime; test_BNT; cpu=cputime-cpu0; elapsed=etime(clock, clock0)