comparison toolboxes/FullBNT-1.0.7/bnt/potentials/@scgpot/extension_pot.m @ 0:e9a9cd732c1e tip

first hg version after svn

+function pot = extension_pot(oldpot, ddom_u, dsizes, ctaildom_u, csizes)
+% EXTENSION_POT Extense a stable CG potential.
+% pot = extension_pot(oldpot, ddom_u, ctaildom_u, dsizes, csizes)
+% ddom_u Added discrete nodes
+% ctaildom_u Added continuous tail nodes
+% csizes is the size of the tail nodes.
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+% A CG potential can be extended by adding discrete variables to its %
+% domain of continuous variables to its tail                         %
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+ddom = myunion(oldpot.ddom, ddom_u);
+ctaildom = myunion(oldpot.ctaildom, ctaildom_u);
+cheaddom = oldpot.cheaddom;
+udom = myunion(ddom_u, ctaildom_u);
+domain = myunion(oldpot.domain, udom);
+
+ns = zeros(1,max(domain));
+ns(ddom_u) = dsizes;
+ns(ctaildom_u) = csizes;
+ns(oldpot.ddom) = oldpot.dsizes;
+ns(oldpot.cheaddom) = oldpot.cheadsizes;
+ns(oldpot.ctaildom) = oldpot.ctailsizes;
+
+dsizes = ns(ddom);
+dsize = prod(ns(ddom));
+cheadsizes = ns(cheaddom);
+cheadsize = sum(ns(cheaddom));
+ctailsizes = ns(ctaildom);
+ctailsize = sum(ns(ctaildom));
+
+BZ = zeros(cheadsize, ctailsize);
+potarray = cell(1, dsize);
+mask = find_equiv_posns(oldpot.ddom, ddom);
+
+tmask = find_equiv_posns(oldpot.ctaildom, ctaildom);
+tu = block(tmask, ctailsizes);
+
+for i=1:dsize
+    sub1 = ind2subv(dsizes, i);
+    sub2 = sub1(mask);
+    ind = subv2ind(oldpot.dsizes, sub2);
+    if isempty(ind)
+        ind = 1;
+    end
+    potc = struct(oldpot.scgpotc{ind});
+    p = potc.p;
+    B = BZ;
+    if ~isempty(B)
+        B(:, tu) = potc.B;
+    end
+    potarray{i} = scgcpot(cheadsize, ctailsize, p, potc.A, B, potc.C);
+end
+
+pot = scgpot(ddom, cheaddom, ctaildom, ns,potarray);