view QueryADB.py @ 373:cd63493c32a9

Add library SONAME versioning.

This has the unfortunate effect of altering how the linker and the
runtime library resolver find relevant files, which has effects on how
the library test suite should be run.  So...

... also rework how to run libtests.  Start by deleting 28
almost-identical copies of Makefile and run-test.sh, and also the
completely useless copy of test-utils.sh.  Then:

* library tests assume the existence of ../libtest.mk, a file with make
  syntax;
* ../libtest.mk is responsible for providing enough symbolic links to
  con the linker and the runtime resolver into finding our library;
* the default way of doing that is by using the -rpath linker flag.
* run-tests.sh converts from test1 success convention ("return 0") to
  tests success convention ("exit 104")
* clean.sh cleans up our symbolic links.

This test regime stands a reasonable chance of running on OS X
eventually, and a snowball's chance in heaven (remember, heaven is
hotter than hell) on Windows.  It should still be straightforward to
merge libtests/ into tests/ when that is appropriate.

Don't forget to add ../libtest.mk

#!/usr/bin/python

# Python code/library to query the audioDB via the SOAP web interface.
# by Malcolm Slaney, August/September 2008
# [e-mail]

import sys, socket
from xml.dom.minidom import parseString

global debug
debug = False
global dbName
dbName = 'tutorial.adb'

# From: http://www.informit.com/articles/article.aspx?p=686162&seqNum=2
#serverHost = 'research-hm3.corp.sk1.yahoo.com'
serverHost = 'localhost'
serverPort = 14475

# Start the server on serverHost with
#	./audioDB -s 14475

# Here are the templates used for the different kinds of queries.  We'll fill in the
# desired parameters are we go.
LIST_TEMPLATE = """
<?xml version="1.0" encoding="UTF-8"?>
<SOAP-ENV:Envelope
 xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"
 xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/"
 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 xmlns:xsd="http://www.w3.org/2001/XMLSchema"
 xmlns:adb="http://tempuri.org/adb.xsd">
 <SOAP-ENV:Body>
  <adb:liszt>
   <dbName>%s</dbName>
   <lisztOffset>0</lisztOffset>
   <lisztLength>100000</lisztLength>
  </adb:liszt>
 </SOAP-ENV:Body>
</SOAP-ENV:Envelope>
"""

SEQUENCE_TEMPLATE = """
<?xml version="1.0" encoding="UTF-8"?>
<SOAP-ENV:Envelope
xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"
xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:xsd="http://www.w3.org/2001/XMLSchema"
xmlns:adb="http://tempuri.org/adb.xsd">
<SOAP-ENV:Body>
 <adb:sequenceQueryByKey>
  <dbName>%s</dbName>
  <featureFileName>%s</featureFileName>
  <queryType>%s</queryType>
  <trackFileName></trackFileName>
  <timesFileName></timesFileName>
  <queryPoint>%s</queryPoint>
  <pointNN>%s</pointNN>			<!-- Number of nearest neighbors to retrieve -->
  <trackNN>%s</trackNN>			<!-- Number of tracks to retrieve -->
  <sequenceLength>%s</sequenceLength>	<!-- Number of frames in a shingle -->
  <radius>%s</radius>			<!-- Distance radius to search -->
  <absolute-threshold>-4.0</absolute-threshold>
  <usingQueryPoint>1</usingQueryPoint>
  <lsh-exact>0</lsh-exact>
 </adb:sequenceQueryByKey>
</SOAP-ENV:Body>
</SOAP-ENV:Envelope>
"""

STATUS_TEMPLATE = """
<?xml version="1.0" encoding="UTF-8"?>
<SOAP-ENV:Envelope
 xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"
 xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/"
 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 xmlns:xsd="http://www.w3.org/2001/XMLSchema"
 xmlns:adb="http://tempuri.org/adb.xsd">
 <SOAP-ENV:Body>
  <adb:status>
   <dbName>%s</dbName>
  </adb:status>
 </SOAP-ENV:Body>
</SOAP-ENV:Envelope>
"""

SHINGLE_QUERY_TEMPLATE = """
<?xml version="1.0" encoding="UTF-8"?>
<SOAP-ENV:Envelope
 xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"
 xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/"
 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 xmlns:xsd="http://www.w3.org/2001/XMLSchema"
 xmlns:adb="http://tempuri.org/adb.xsd">
 <SOAP-ENV:Body>
  <adb:shingleQuery>
   <dbName>%s</dbName>
   <qVector>
   <dim>%s</dim>
      %s
      %s
   </qVector>
   <keyList></keyList>
   <timesFileName></timesFileName>
   <queryType>32</queryType>
   <queryPos>%s</queryPos>
   <pointNN>%s</pointNN>
   <trackNN>%s</trackNN>
   <sequenceLength>1</sequenceLength>
   <radius>%s</radius>
   <absolute-threshold>%s</absolute-threshold>
   <relative-threshold>%s</relative-threshold>
   <exhaustive>%s</exhaustive>
   <lsh-exact>%s</lsh-exact>
  </adb:shingleQuery>
 </SOAP-ENV:Body>
</SOAP-ENV:Envelope>
"""

###############  List Query - Show the files in the database ###########
# Return a list of (key identifier, frame length) pairs.
def RunListQuery():
	global debug, dbName
	message = LIST_TEMPLATE%(dbName)
	
	response = SendXMLCommand(message)
	return response

# Construct a list from the two DOM entries passed.  Used with the map routine to 
# assemble the output.
def ParseListConstruct(f,l):
	el = [f.firstChild.data.encode('latin-1'),l.firstChild.data.encode('latin-1')]
	return el
	
def ParseListXML(response):
	dom = parseString(response)
	fileElements = dom.getElementsByTagName('Rkey')
	# print fileElements
	lenElements = dom.getElementsByTagName('Rlen')
	# print lenElements
	return map(ParseListConstruct, fileElements, lenElements)

###############  Status Query - Show the status of the database ###########
# Return a dictionary with the status fields
def GetDomElement(dom, field):
	els = dom.getElementsByTagName(field)
	if len(els) > 0:
		return els[0].firstChild.data.encode('latin-1')
	else:
		return ""

def RunStatusQuery():
	global debug, dbName
	message = STATUS_TEMPLATE%(dbName)

	response = SendXMLCommand(message)
	# print response
	dom = parseString(response)
	status = {}
	status['numFiles'] = GetDomElement(dom, 'numFiles')
	status['dim'] = GetDomElement(dom, 'dim')
	status['length'] = GetDomElement(dom, 'length')
	status['dudCount'] = GetDomElement(dom, 'dudCount')
	status['nullCount'] = GetDomElement(dom, 'nullCount')
	return status



###############  Shingle/Matrix Query - Show the data closest to shingle range ###########
#
# Encode features as a matrix with dim columns, and (optionally) powers as a matrix with one column
# dim   # number of columns
# f1,1 f1,2...f1,dim # first row
# f2,1 f2,2...f2,dim
# ...
# fN,1 fN,2...fN,dim # last row
# p1,1         # first row's power
# p2,1
# ...
# pN,1         # last row's power
#
def RunShingleQuery():
	global debug, dbName
	featureDim = '3'
	queryVector='<v>1.0</v><v>0.5</v><v>0.25</v><v>0.5</v><v>1.5</v><v>1.0</v>'  # two rows of features
	powerVector='<p>-1.0</p><p>-1.0</p>'   # one power feature per row
	queryPos = '0'  # where in the feature sequence to start the shingle query
	pointNN = '10'  # how many near points to return per track
	trackNN = '10'  # how many near tracks to return
	radius = '1.0'  # search radius
	absoluteThreshold = '-4.5'  # absolute silence threshold in Bels (query and database shingles)
	relativeThreshold = '0'     # relative silence threshold in Bels between features, 0 = ignore
	exhaustive = '0'            # 1 = perform query using all subsequences of features of length sequenceLength
	lshExact = '0'              # if using an index then compute exact distances after LSH retrieval
	message = SHINGLE_QUERY_TEMPLATE
	message = SHINGLE_QUERY_TEMPLATE%(dbName, featureDim, queryVector, powerVector, queryPos, pointNN, trackNN, radius, absoluteThreshold, relativeThreshold, exhaustive, lshExact);
	# print message
	print message
	response = SendXMLCommand(message)
	ParseShingleXML(response)
		

###############  Sequence Query - Show the data closest to one query ###########
def RunSequenceQuery(argv):
	global debug, dbName	
	if len(argv) > 2:
		dbKey = argv[2]
		qType = '32'			# nSequence
		qPos = argv[3]
		pointNN = '10'
		trackNN = '5'
		seqLen = argv[4]
		queryRadius = '0.5'
	else:
		dbKey = 'tmp/3.chr'
		qType = '32'			# nSequence
		qPos = '110'
		pointNN = '10'
		trackNN = '5'
		seqLen = '20'
		queryRadius = '0.4'

	message = SEQUENCE_TEMPLATE
	message = SEQUENCE_TEMPLATE%(dbName, dbKey, qType, qPos, pointNN, trackNN, seqLen, queryRadius)
	# print message
	response = SendXMLCommand(message)
	ParseShingleXML(response)

def ParseShingleXML(response):
	# Grab all the responses
	#	See http://diveintopython.org/xml_processing/parsing_xml.html
	dom = parseString(response)
	resultList = []
	for node in dom.getElementsByTagName('Rlist'):
		# print node.toxml()
		resultList.append(node.firstChild.data.encode('latin-1'))

	distanceList = []
	for node in dom.getElementsByTagName('Dist'):
		# print node.toxml()
		distanceList.append(node.firstChild.data.encode('latin-1'))

	positionList = []
	for node in dom.getElementsByTagName('Spos'):
		# print node.toxml()
		positionList.append(node.firstChild.data.encode('latin-1'))

	# print resultList
	# print distanceList
	# print positionList

	# Print out a summary of the most similar results
	for i in range(0,len(resultList)):
		if i > 0 and resultList[i] != resultList[i-1]:
			print
		print positionList[i], distanceList[i], resultList[i]

	dom.unlink()

###############  XML and Network Utilities ###########
# Send one XML SOAP command to the server.  Get back the response.

def SendXMLCommand(message):
	global debug
	if debug:
		print message
		print

	#Create a socket
	sSock = socket.socket(socket.AF_INET, socket.SOCK_STREAM)

	#Connect to server
	sSock.connect((serverHost, serverPort))

	#Send messages
	sSock.send(message)
	data = ""
	# Now loop, while getting all the data we can get from the socket.
	while True:
		c = sSock.recv(4096)
		if c == "":
			break
		data += c
	if data == "":
		print "No response from the audioDB server"
		sys.exit(0)
	# Split off the HTTP header and the data
	header,response = data.split("\r\n\r\n", 1)
	if debug:
		print 'Client received: ',response

	sSock.close()
	return response

	
###############  Main Program - Figure out which query we want ###########

# Argument processing scheme described at: http://docs.python.org/lib/module-getopt.html

import sys
if __name__=="__main__":
	cmdname = sys.argv[0]
	if len(sys.argv) == 1:
		print "Syntax: " + sys.argv[0] + " -q feature_file pos len"
		sys.exit(1)

	queryType = sys.argv[1]
	if queryType == '-s' or queryType == 'status':
		response = RunStatusQuery()
		for k, v in response.iteritems():
			print k, v
	elif queryType == '-q' or queryType == 'query':
		RunSequenceQuery(sys.argv)
	elif queryType == '-l' or queryType == 'list':
		response = RunListQuery()
		# print response
		results = ParseListXML(response)
		for (f,l) in results:
			print "%s\t%s" % (f,l)
	elif queryType == '-v' or queryType == 'vector':
		response = RunShingleQuery()