view dump.cpp @ 251:a6c9a1c68646

Detect when we've run out of per-file space on insert() and
batchinsert().

Exposed by Lute Music/frames1 dataset, we previously corrupted the
trackTable and then got a segfault.  This happened because the fileTable
and trackTable were mmap()ed next to each other, by coincidence, and the
lack of overflow checking on the fileTable meant that continued
insertion scribbled over the trackTable, which was twice as big (because
it has to be at least one memory page in size).

The root cause of all this is the --size creation argument, which needs
to be split into --nfiles, --datasize and --dimensions, so that the size
of all the tables can be computed accurately.

No test case yet, because my /bin/sh is currently pointing to dash,
which gets about as far as line 6 of run-tests.sh before giving up.
(We need either to fix bashisms or to run /bin/bash explicitly.)

#include "audioDB.h"

void audioDB::dump(const char* dbName){
  if(!dbH) {
    initTables(dbName, 0);
  }

  if((mkdir(output, S_IRWXU|S_IRWXG|S_IRWXO)) < 0) {
    error("error making output directory", output, "mkdir");
  }

  char *cwd = new char[PATH_MAX];

  if ((getcwd(cwd, PATH_MAX)) == 0) {
    error("error getting working directory", "", "getcwd");
  }

  if((chdir(output)) < 0) {
    error("error changing working directory", output, "chdir");
  }

  int fLfd, tLfd = 0, pLfd = 0, kLfd;
  FILE *fLFile, *tLFile = 0, *pLFile = 0, *kLFile;

  if ((fLfd = open("featureList.txt", O_CREAT|O_RDWR|O_EXCL, S_IRUSR|S_IWUSR|S_IRGRP|S_IWGRP|S_IROTH|S_IWOTH)) < 0) {
    error("error creating featureList file", "featureList.txt", "open");
  }

  int times = dbH->flags & O2_FLAG_TIMES;
  if (times) {
    if ((tLfd = open("timesList.txt", O_CREAT|O_RDWR|O_EXCL, S_IRUSR|S_IWUSR|S_IRGRP|S_IWGRP|S_IROTH|S_IWOTH)) < 0) {
      error("error creating timesList file", "timesList.txt", "open");
    }
  }

  int power = dbH->flags & O2_FLAG_POWER;
  if (power) {
    if ((pLfd = open("powerList.txt", O_CREAT|O_RDWR|O_EXCL, S_IRUSR|S_IWUSR|S_IRGRP|S_IWGRP|S_IROTH|S_IWOTH)) < 0) {
      error("error creating powerList file", "powerList.txt", "open");
    }
  }

  if ((kLfd = open("keyList.txt", O_CREAT|O_RDWR|O_EXCL, S_IRUSR|S_IWUSR|S_IRGRP|S_IWGRP|S_IROTH|S_IWOTH)) < 0) {
    error("error creating keyList file", "keyList.txt", "open");
  }
  
  /* can these fail?  I sincerely hope not. */
  fLFile = fdopen(fLfd, "w");
  if (times) {
    tLFile = fdopen(tLfd, "w");
  }
  if (power) {
    pLFile = fdopen(pLfd, "w");
  }
  kLFile = fdopen(kLfd, "w");

  char *fName = new char[256];
  int ffd, pfd;
  FILE *tFile;
  unsigned pos = 0;
  lseek(dbfid, dbH->dataOffset, SEEK_SET);
  double *data_buffer;
  size_t data_buffer_size;
  for(unsigned k = 0; k < dbH->numFiles; k++) {
    fprintf(kLFile, "%s\n", fileTable + k*O2_FILETABLESIZE);
    snprintf(fName, 256, "%05d.features", k);
    if ((ffd = open(fName, O_CREAT|O_RDWR|O_EXCL, S_IRUSR|S_IWUSR|S_IRGRP|S_IWGRP|S_IROTH|S_IWOTH)) < 0) {
      error("error creating feature file", fName, "open");
    }
    if ((write(ffd, &dbH->dim, sizeof(uint32_t))) < 0) {
      error("error writing dimensions", fName, "write");
    }

    /* FIXME: this repeated malloc()/free() of data buffers is
       inefficient. */
    data_buffer_size = trackTable[k] * dbH->dim * sizeof(double);

    {
      void *tmp = malloc(data_buffer_size);
      if (tmp == NULL) {
	error("error allocating data buffer");
      }
      data_buffer = (double *) tmp;
    }

    if ((read(dbfid, data_buffer, data_buffer_size)) != (ssize_t) data_buffer_size) {
      error("error reading data", fName, "read");
    }

    if ((write(ffd, data_buffer, data_buffer_size)) < 0) {
      error("error writing data", fName, "write");
    }

    free(data_buffer);

    fprintf(fLFile, "%s\n", fName);
    close(ffd);

    if (times) {
      snprintf(fName, 256, "%05d.times", k);
      tFile = fopen(fName, "w");
      for(unsigned i = 0; i < trackTable[k]; i++) {
        // KLUDGE: specifying 16 digits of precision after the decimal
        // point is (but check this!) sufficient to uniquely identify
        // doubles; however, that will cause ugliness, as that's
        // vastly too many for most values of interest.  Moving to %a
        // here and scanf() in the timesFile reading might fix this.
        // -- CSR, 2007-10-19
        fprintf(tFile, "%.16e\n", *(timesTable + 2*pos + 2*i));
      }
      fprintf(tFile, "%.16e\n", *(timesTable + 2*pos + 2*trackTable[k]-1));

      fprintf(tLFile, "%s\n", fName);
    }

    if (power) {
      uint32_t one = 1;
      snprintf(fName, 256, "%05d.power", k);
      if ((pfd = open(fName, O_CREAT|O_RDWR|O_EXCL, S_IRUSR|S_IWUSR|S_IRGRP|S_IWGRP|S_IROTH|S_IWOTH)) < 0) {
	error("error creating power file", fName, "open");
      }
      if ((write(pfd, &one, sizeof(uint32_t))) < 0) {
	error("error writing one", fName, "write");
      }
      if ((write(pfd, powerTable + pos, trackTable[k] * sizeof(double))) < 0) {
	error("error writing data", fName, "write");
      }
      fprintf(pLFile, "%s\n", fName);
      close(pfd);
    } 

    pos += trackTable[k];
    std::cout << fileTable+k*O2_FILETABLESIZE << " " << trackTable[k] << std::endl;
  }

  FILE *scriptFile;
  scriptFile = fopen("restore.sh", "w");
  fprintf(scriptFile, "\
#! /bin/sh\n\
#\n\
# usage: AUDIODB=/path/to/audioDB sh ./restore.sh <newdb>\n\
\n\
if [ -z \"${AUDIODB}\" ]; then echo set AUDIODB variable; exit 1; fi\n\
if [ -z \"$1\" ]; then echo usage: $0 newdb; exit 1; fi\n\n\
\"${AUDIODB}\" -d \"$1\" -N --size=%d\n", (int) (dbH->dbSize / 1000000));
  if(dbH->flags & O2_FLAG_L2NORM) {
    fprintf(scriptFile, "\"${AUDIODB}\" -d \"$1\" -L\n");
  }
  if(power) {
    fprintf(scriptFile, "\"${AUDIODB}\" -d \"$1\" -P\n");
  }
  fprintf(scriptFile, "\"${AUDIODB}\" -d \"$1\" -B -F featureList.txt -K keyList.txt");
  if(times) {
    fprintf(scriptFile, " -T timesList.txt");
  }
  if(power) {
    fprintf(scriptFile, " -W powerList.txt");
  }
  fprintf(scriptFile, "\n");
  fclose(scriptFile);

  if((chdir(cwd)) < 0) {
    error("error changing working directory", cwd, "chdir");
  }

  fclose(fLFile);
  if(times) {
    fclose(tLFile);
  }
  if(power) {
    fclose(pLFile);
  }
  fclose(kLFile);
  delete[] fName;
    
  status(dbName);
}