diff gengetopt.in @ 337:ccf15a8c3e46

gengetopt does not support multiple dependencies, so added test for database_given for INDEX command. Still cannot figure out why sometimes error(...) throws char* exception and SIG_ABORT

--- a/gengetopt.in	Fri Sep 05 14:16:21 2008 +0000
+++ b/gengetopt.in	Fri Sep 05 14:35:44 2008 +0000
@@ -66,7 +66,7 @@
 
 section "Locality-sensitive hashing (LSH) parameters" sectiondesc="These parameters control LSH indexing and retrieval\n"
 
-option "INDEX"  X "build an index for -d database at -R radius and -l sequenceLength" dependon="database" dependon="radius" optional
+option "INDEX"  X "build an index for -d database at -R radius and -l sequenceLength" dependon="radius" optional
 option "lsh_w" - "width of LSH hash-function bins. " double default="4.0" dependon="INDEX" optional hidden
 option "lsh_k" - "even number of independent hash functions to employ with LSH" int typestr="size" default="8" dependon="INDEX" optional
 option "lsh_m" - "number of hash tables is m(m-1)/2" int typestr="size" default="5" dependon="INDEX" optional