annotate audioDB.cpp @ 354:4871a3ed9e36 pre_api

Added serialized feature query Web Service, server-side only, example Python script: QueryADB.py -v
author mas01mc
date Fri, 07 Nov 2008 12:48:26 +0000
parents 30384a82983a
children 94c18f128ce8
rev   line source
mas01cr@0 1 #include "audioDB.h"
mas01cr@0 2
mas01mc@308 3 LSH* SERVER_LSH_INDEX_SINGLETON;
mas01mc@324 4 char* SERVER_ADB_ROOT;
mas01mc@324 5 char* SERVER_ADB_FEATURE_ROOT;
mas01mc@308 6
mas01mc@292 7 PointPair::PointPair(Uns32T a, Uns32T b, Uns32T c):trackID(a),qpos(b),spos(c){};
mas01mc@292 8
mas01mc@292 9 bool operator<(const PointPair& a, const PointPair& b){
mas01mc@324 10 return ( (a.trackID<b.trackID) ||
mas01mc@324 11 ( (a.trackID==b.trackID) &&
mas01mc@324 12 ( (a.spos<b.spos) || ( (a.spos==b.spos) && (a.qpos < b.qpos) )) ) );
mas01mc@292 13 }
mas01mc@292 14
mas01mc@292 15 bool operator>(const PointPair& a, const PointPair& b){
mas01mc@324 16 return ( (a.trackID>b.trackID) ||
mas01mc@324 17 ( (a.trackID==b.trackID) &&
mas01mc@324 18 ( (a.spos>b.spos) || ( (a.spos==b.spos) && (a.qpos > b.qpos) )) ) );
mas01mc@292 19 }
mas01mc@292 20
mas01mc@292 21 bool operator==(const PointPair& a, const PointPair& b){
mas01mc@292 22 return ( (a.trackID==b.trackID) && (a.qpos==b.qpos) && (a.spos==b.spos) );
mas01mc@292 23 }
mas01mc@292 24
mas01cr@345 25 audioDB::audioDB(const unsigned argc, const char *const argv[]): O2_AUDIODB_INITIALIZERS
mas01cr@76 26 {
mas01cr@0 27 if(processArgs(argc, argv)<0){
mas01cr@0 28 printf("No command found.\n");
mas01cr@0 29 cmdline_parser_print_version ();
mas01cr@0 30 if (strlen(gengetopt_args_info_purpose) > 0)
mas01cr@0 31 printf("%s\n", gengetopt_args_info_purpose);
mas01cr@0 32 printf("%s\n", gengetopt_args_info_usage);
mas01cr@0 33 printf("%s\n", gengetopt_args_info_help[1]);
mas01cr@0 34 printf("%s\n", gengetopt_args_info_help[2]);
mas01cr@0 35 printf("%s\n", gengetopt_args_info_help[0]);
mas01cr@151 36 error("No command found");
mas01cr@0 37 }
mas01cr@77 38
mas01mc@324 39 // Perform database prefix substitution
mas01mc@328 40 if(dbName && adb_root)
mas01mc@324 41 prefix_name((char** const)&dbName, adb_root);
mas01mc@324 42
mas01cr@0 43 if(O2_ACTION(COM_SERVER))
mas01cr@0 44 startServer();
mas01cr@0 45
mas01cr@0 46 else if(O2_ACTION(COM_CREATE))
mas01cr@0 47 create(dbName);
mas01cr@0 48
mas01cr@0 49 else if(O2_ACTION(COM_INSERT))
mas01cr@0 50 insert(dbName, inFile);
mas01cr@0 51
mas01cr@0 52 else if(O2_ACTION(COM_BATCHINSERT))
mas01cr@0 53 batchinsert(dbName, inFile);
mas01cr@0 54
mas01cr@0 55 else if(O2_ACTION(COM_QUERY))
mas01mc@307 56 if(isClient){
mas01mc@329 57 if(query_from_key){
mas01mc@332 58 VERB_LOG(1, "Calling web services query %s on database %s, query=%s\n", radius>0?"(Radius)":"(NN)", dbName, (key&&strlen(key))?key:inFile);
mas01mc@328 59 ws_query_by_key(dbName, key, inFile, (char*)hostport);
mas01mc@329 60 }
mas01mc@329 61 else{
mas01mc@332 62 VERB_LOG(1, "Calling web services query on database %s, query=%s\n", dbName, (key&&strlen(key))?key:inFile);
mas01mc@307 63 ws_query(dbName, inFile, (char*)hostport);
mas01mc@329 64 }
mas01mc@307 65 }
mas01cr@0 66 else
mas01cr@76 67 query(dbName, inFile);
mas01cr@0 68
mas01cr@0 69 else if(O2_ACTION(COM_STATUS))
mas01cr@0 70 if(isClient)
mas01cr@0 71 ws_status(dbName,(char*)hostport);
mas01cr@0 72 else
mas01cr@0 73 status(dbName);
mas01cr@280 74
mas01cr@280 75 else if(O2_ACTION(COM_SAMPLE))
mas01cr@280 76 sample(dbName);
mas01cr@0 77
mas01cr@0 78 else if(O2_ACTION(COM_L2NORM))
mas01cr@0 79 l2norm(dbName);
mas01cr@0 80
mas01cr@193 81 else if(O2_ACTION(COM_POWER))
mas01cr@193 82 power_flag(dbName);
mas01cr@193 83
mas01cr@0 84 else if(O2_ACTION(COM_DUMP))
mas01cr@0 85 dump(dbName);
mas01mc@292 86
mas01mc@334 87 else if(O2_ACTION(COM_LISZT))
mas01mc@334 88 if(isClient)
mas01mc@334 89 ws_liszt(dbName, (char*) hostport);
mas01mc@334 90 else
mas01mc@334 91 liszt(dbName, lisztOffset, lisztLength);
mas01mc@334 92
mas01mc@292 93 else if(O2_ACTION(COM_INDEX))
mas01mc@292 94 index_index_db(dbName);
mas01cr@0 95
mas01cr@0 96 else
mas01cr@0 97 error("Unrecognized command",command);
mas01cr@0 98 }
mas01cr@0 99
mas01cr@345 100 audioDB::audioDB(const unsigned argc, const char *const argv[], adb__queryResponse *adbQueryResponse): O2_AUDIODB_INITIALIZERS
mas01cr@76 101 {
mas01cr@97 102 try {
mas01mc@338 103 isServer = 1; // Set to make errors report over SOAP
mas01cr@97 104 processArgs(argc, argv);
mas01mc@324 105 // Perform database prefix substitution
mas01mc@328 106 if(dbName && adb_root)
mas01mc@324 107 prefix_name((char** const)&dbName, adb_root);
mas01cr@97 108 assert(O2_ACTION(COM_QUERY));
mas01cr@133 109 query(dbName, inFile, adbQueryResponse);
mas01cr@97 110 } catch(char *err) {
mas01cr@97 111 cleanup();
mas01cr@97 112 throw(err);
mas01cr@97 113 }
mas01cr@76 114 }
mas01cr@76 115
mas01cr@345 116 audioDB::audioDB(const unsigned argc, const char* const argv[], adb__statusResponse *adbStatusResponse): O2_AUDIODB_INITIALIZERS
mas01cr@76 117 {
mas01cr@97 118 try {
mas01mc@338 119 isServer = 1; // Set to make errors report over SOAP
mas01cr@97 120 processArgs(argc, argv);
mas01mc@324 121 // Perform database prefix substitution
mas01mc@328 122 if(dbName && adb_root)
mas01mc@324 123 prefix_name((char** const)&dbName, adb_root);
mas01cr@97 124 assert(O2_ACTION(COM_STATUS));
mas01cr@133 125 status(dbName, adbStatusResponse);
mas01cr@97 126 } catch(char *err) {
mas01cr@97 127 cleanup();
mas01cr@97 128 throw(err);
mas01cr@97 129 }
mas01cr@76 130 }
mas01cr@76 131
mas01cr@345 132 audioDB::audioDB(const unsigned argc, const char *const argv[], adb__lisztResponse *adbLisztResponse): O2_AUDIODB_INITIALIZERS
mas01mc@334 133 {
mas01mc@334 134 try {
mas01mc@338 135 isServer = 1; // Set to make errors report over SOAP
mas01mc@338 136 processArgs(argc, argv);
mas01mc@334 137 // Perform database prefix substitution
mas01mc@334 138 if(dbName && adb_root)
mas01mc@334 139 prefix_name((char** const)&dbName, adb_root);
mas01mc@334 140 assert(O2_ACTION(COM_LISZT));
mas01mc@334 141 liszt(dbName, lisztOffset, lisztLength, adbLisztResponse);
mas01mc@334 142 } catch(char *err) {
mas01mc@334 143 cleanup();
mas01mc@334 144 throw(err);
mas01mc@334 145 }
mas01mc@334 146 }
mas01mc@334 147
mas01cr@97 148 void audioDB::cleanup() {
mas01cr@122 149 cmdline_parser_free(&args_info);
mas01cr@0 150 if(indata)
mas01cr@0 151 munmap(indata,statbuf.st_size);
mas01cr@0 152 if(db)
mas01cr@196 153 munmap(db,getpagesize());
mas01cr@196 154 if(fileTable)
mas01cr@196 155 munmap(fileTable, fileTableLength);
mas01cr@196 156 if(trackTable)
mas01cr@196 157 munmap(trackTable, trackTableLength);
mas01cr@196 158 if(dataBuf)
mas01cr@196 159 munmap(dataBuf, dataBufLength);
mas01cr@196 160 if(timesTable)
mas01cr@196 161 munmap(timesTable, timesTableLength);
mas01mc@314 162 if(powerTable)
mas01mc@314 163 munmap(powerTable, powerTableLength);
mas01cr@196 164 if(l2normTable)
mas01cr@196 165 munmap(l2normTable, l2normTableLength);
mas01mc@324 166 if(featureFileNameTable)
mas01mc@324 167 munmap(featureFileNameTable, fileTableLength);
mas01mc@324 168 if(timesFileNameTable)
mas01mc@324 169 munmap(timesFileNameTable, fileTableLength);
mas01mc@324 170 if(powerFileNameTable)
mas01mc@324 171 munmap(powerFileNameTable, fileTableLength);
mas01mc@292 172 if(trackOffsetTable)
mas01mc@292 173 delete trackOffsetTable;
mas01mc@292 174 if(reporter)
mas01mc@292 175 delete reporter;
mas01mc@292 176 if(exact_evaluation_queue)
mas01mc@292 177 delete exact_evaluation_queue;
mas01cr@284 178 if(rng)
mas01cr@284 179 gsl_rng_free(rng);
mas01mc@292 180 if(vv)
mas01mc@292 181 delete vv;
mas01cr@0 182 if(dbfid>0)
mas01cr@0 183 close(dbfid);
mas01cr@0 184 if(infid>0)
mas01cr@0 185 close(infid);
mas01cr@0 186 if(dbH)
mas01cr@0 187 delete dbH;
mas01mc@308 188 if(lsh!=SERVER_LSH_INDEX_SINGLETON)
mas01mc@308 189 delete lsh;
mas01cr@0 190 }
mas01cr@0 191
mas01cr@97 192 audioDB::~audioDB(){
mas01cr@97 193 cleanup();
mas01cr@97 194 }
mas01cr@97 195
mas01cr@345 196 int audioDB::processArgs(const unsigned argc, const char *const argv[]){
mas01cr@0 197
mas01cr@0 198 if(argc<2){
mas01cr@0 199 cmdline_parser_print_version ();
mas01cr@0 200 if (strlen(gengetopt_args_info_purpose) > 0)
mas01cr@0 201 printf("%s\n", gengetopt_args_info_purpose);
mas01cr@0 202 printf("%s\n", gengetopt_args_info_usage);
mas01cr@0 203 printf("%s\n", gengetopt_args_info_help[1]);
mas01cr@0 204 printf("%s\n", gengetopt_args_info_help[2]);
mas01cr@0 205 printf("%s\n", gengetopt_args_info_help[0]);
mas01cr@0 206 exit(0);
mas01cr@0 207 }
mas01cr@0 208
mas01cr@345 209 /* KLUDGE: gengetopt generates a function which is not completely
mas01cr@345 210 const-clean in its declaration. We cast argv here to keep the
mas01cr@345 211 compiler happy. -- CSR, 2008-10-08 */
mas01cr@345 212 if (cmdline_parser (argc, (char *const *) argv, &args_info) != 0)
mas01cr@151 213 error("Error parsing command line");
mas01cr@0 214
mas01cr@0 215 if(args_info.help_given){
mas01cr@0 216 cmdline_parser_print_help();
mas01cr@0 217 exit(0);
mas01cr@0 218 }
mas01cr@0 219
mas01cr@0 220 if(args_info.verbosity_given){
mas01cr@239 221 verbosity = args_info.verbosity_arg;
mas01cr@239 222 if(verbosity < 0 || verbosity > 10){
mas01cr@239 223 std::cerr << "Warning: verbosity out of range, setting to 1" << std::endl;
mas01cr@239 224 verbosity = 1;
mas01cr@0 225 }
mas01cr@0 226 }
mas01cr@0 227
mas01cr@129 228 if(args_info.size_given) {
mas01cr@256 229 if(args_info.datasize_given) {
mas01cr@256 230 error("both --size and --datasize given", "");
mas01cr@256 231 }
mas01cr@256 232 if(args_info.ntracks_given) {
mas01cr@256 233 error("both --size and --ntracks given", "");
mas01cr@256 234 }
mas01cr@256 235 if(args_info.datadim_given) {
mas01cr@256 236 error("both --size and --datadim given", "");
mas01cr@256 237 }
mas01cr@196 238 if (args_info.size_arg < 50 || args_info.size_arg > 32000) {
mas01cr@129 239 error("Size out of range", "");
mas01cr@129 240 }
mas01cr@256 241 double ratio = (double) args_info.size_arg * 1000000 / ((double) O2_DEFAULTDBSIZE);
mas01cr@256 242 /* FIXME: what's the safe way of doing this? */
mas01cr@256 243 datasize = (unsigned int) ceil(datasize * ratio);
mas01cr@256 244 ntracks = (unsigned int) ceil(ntracks * ratio);
mas01cr@256 245 } else {
mas01cr@256 246 if(args_info.datasize_given) {
mas01cr@256 247 datasize = args_info.datasize_arg;
mas01cr@256 248 }
mas01cr@256 249 if(args_info.ntracks_given) {
mas01cr@256 250 ntracks = args_info.ntracks_arg;
mas01cr@256 251 }
mas01cr@256 252 if(args_info.datadim_given) {
mas01cr@256 253 datadim = args_info.datadim_arg;
mas01cr@256 254 }
mas01cr@129 255 }
mas01cr@129 256
mas01cr@239 257 if(args_info.radius_given) {
mas01cr@239 258 radius = args_info.radius_arg;
mas01mc@307 259 if(radius < 0 || radius > 1000000000) {
mas01cr@77 260 error("radius out of range");
mas01cr@239 261 } else {
mas01cr@239 262 VERB_LOG(3, "Setting radius to %f\n", radius);
mas01mc@17 263 }
mas01mc@17 264 }
mas01mc@17 265
mas01mc@292 266 sequenceLength = args_info.sequencelength_arg;
mas01mc@292 267 if(sequenceLength < 1 || sequenceLength > 1000) {
mas01mc@292 268 error("seqlen out of range: 1 <= seqlen <= 1000");
mas01mc@292 269 }
mas01mc@292 270 sequenceHop = args_info.sequencehop_arg;
mas01mc@292 271 if(sequenceHop < 1 || sequenceHop > 1000) {
mas01mc@292 272 error("seqhop out of range: 1 <= seqhop <= 1000");
mas01mc@292 273 }
mas01mc@292 274
mas01mc@292 275 if (args_info.absolute_threshold_given) {
mas01mc@292 276 if (args_info.absolute_threshold_arg >= 0) {
mas01mc@292 277 error("absolute threshold out of range: should be negative");
mas01mc@292 278 }
mas01mc@292 279 use_absolute_threshold = true;
mas01mc@292 280 absolute_threshold = args_info.absolute_threshold_arg;
mas01mc@292 281 }
mas01mc@292 282 if (args_info.relative_threshold_given) {
mas01mc@292 283 use_relative_threshold = true;
mas01mc@292 284 relative_threshold = args_info.relative_threshold_arg;
mas01mc@292 285 }
mas01mc@292 286
mas01mc@324 287 if (args_info.adb_root_given){
mas01mc@324 288 adb_root = args_info.adb_root_arg;
mas01mc@324 289 }
mas01mc@324 290
mas01mc@324 291 if (args_info.adb_feature_root_given){
mas01mc@324 292 adb_feature_root = args_info.adb_feature_root_arg;
mas01mc@324 293 }
mas01mc@324 294
mas01mc@324 295 // perform dbName path prefix SERVER-side subsitution
mas01mc@324 296 if(SERVER_ADB_ROOT && !adb_root)
mas01mc@324 297 adb_root = SERVER_ADB_ROOT;
mas01mc@324 298 if(SERVER_ADB_FEATURE_ROOT && !adb_feature_root)
mas01mc@324 299 adb_feature_root = SERVER_ADB_FEATURE_ROOT;
mas01mc@339 300
mas01cr@0 301 if(args_info.SERVER_given){
mas01cr@0 302 command=COM_SERVER;
mas01cr@0 303 port=args_info.SERVER_arg;
mas01cr@0 304 if(port<100 || port > 100000)
mas01cr@0 305 error("port out of range");
mas01cr@105 306 #if defined(O2_DEBUG)
mas01cr@104 307 struct sigaction sa;
mas01cr@104 308 sa.sa_sigaction = sigterm_action;
mas01cr@104 309 sa.sa_flags = SA_SIGINFO | SA_RESTART | SA_NODEFER;
mas01cr@104 310 sigaction(SIGTERM, &sa, NULL);
mas01cr@104 311 sa.sa_sigaction = sighup_action;
mas01cr@104 312 sa.sa_flags = SA_SIGINFO | SA_RESTART | SA_NODEFER;
mas01cr@104 313 sigaction(SIGHUP, &sa, NULL);
mas01cr@105 314 #endif
mas01mc@308 315 if(args_info.load_index_given){
mas01mc@308 316 if(!args_info.database_given)
mas01mc@308 317 error("load_index requires a --database argument");
mas01mc@308 318 else
mas01mc@308 319 dbName=args_info.database_arg;
mas01mc@308 320 if(!args_info.radius_given)
mas01mc@308 321 error("load_index requires a --radius argument");
mas01mc@308 322 if(!args_info.sequencelength_given)
mas01mc@308 323 error("load_index requires a --sequenceLength argument");
mas01mc@308 324 WS_load_index = true;
mas01mc@308 325 }
mas01cr@0 326 return 0;
mas01cr@0 327 }
mas01cr@0 328
mas01cr@0 329 // No return on client command, find database command
mas01cr@105 330 if(args_info.client_given){
mas01cr@105 331 command=COM_CLIENT;
mas01cr@105 332 hostport=args_info.client_arg;
mas01cr@105 333 isClient=1;
mas01cr@105 334 }
mas01cr@0 335
mas01cr@105 336 if(args_info.NEW_given){
mas01cr@105 337 command=COM_CREATE;
mas01cr@105 338 dbName=args_info.database_arg;
mas01cr@105 339 return 0;
mas01cr@105 340 }
mas01cr@0 341
mas01cr@105 342 if(args_info.STATUS_given){
mas01cr@105 343 command=COM_STATUS;
mas01cr@105 344 dbName=args_info.database_arg;
mas01cr@105 345 return 0;
mas01cr@105 346 }
mas01cr@0 347
mas01cr@280 348 if(args_info.SAMPLE_given) {
mas01cr@280 349 command = COM_SAMPLE;
mas01cr@280 350 dbName = args_info.database_arg;
mas01cr@280 351 sequenceLength = args_info.sequencelength_arg;
mas01cr@280 352 if(sequenceLength < 1 || sequenceLength > 1000) {
mas01cr@280 353 error("seqlen out of range: 1 <= seqlen <= 1000");
mas01cr@280 354 }
mas01cr@280 355 nsamples = args_info.nsamples_arg;
mas01cr@280 356 return 0;
mas01cr@280 357 }
mas01cr@280 358
mas01cr@105 359 if(args_info.DUMP_given){
mas01cr@105 360 command=COM_DUMP;
mas01cr@105 361 dbName=args_info.database_arg;
mas01cr@131 362 output = args_info.output_arg;
mas01cr@105 363 return 0;
mas01cr@105 364 }
mas01cr@0 365
mas01cr@105 366 if(args_info.L2NORM_given){
mas01cr@105 367 command=COM_L2NORM;
mas01cr@105 368 dbName=args_info.database_arg;
mas01cr@105 369 return 0;
mas01cr@105 370 }
mas01cr@0 371
mas01cr@193 372 if(args_info.POWER_given){
mas01cr@193 373 command=COM_POWER;
mas01cr@193 374 dbName=args_info.database_arg;
mas01cr@193 375 return 0;
mas01cr@193 376 }
mas01cr@193 377
mas01cr@105 378 if(args_info.INSERT_given){
mas01cr@105 379 command=COM_INSERT;
mas01cr@105 380 dbName=args_info.database_arg;
mas01cr@105 381 inFile=args_info.features_arg;
mas01cr@105 382 if(args_info.key_given)
mas01mc@292 383 if(!args_info.features_given)
mas01mc@292 384 error("INSERT: '-k key' argument depends on '-f features'");
mas01mc@292 385 else
mas01mc@292 386 key=args_info.key_arg;
mas01cr@105 387 if(args_info.times_given){
mas01cr@105 388 timesFileName=args_info.times_arg;
mas01cr@105 389 if(strlen(timesFileName)>0){
mas01cr@239 390 if(!(timesFile = new std::ifstream(timesFileName,std::ios::in)))
mas01cr@105 391 error("Could not open times file for reading", timesFileName);
mas01cr@105 392 usingTimes=1;
mas01cr@105 393 }
mas01cr@105 394 }
mas01cr@193 395 if (args_info.power_given) {
mas01cr@193 396 powerFileName = args_info.power_arg;
mas01cr@193 397 if (strlen(powerFileName) > 0) {
mas01cr@193 398 if (!(powerfd = open(powerFileName, O_RDONLY))) {
mas01cr@193 399 error("Could not open power file for reading", powerFileName, "open");
mas01cr@193 400 }
mas01cr@193 401 usingPower = 1;
mas01cr@193 402 }
mas01cr@193 403 }
mas01cr@105 404 return 0;
mas01cr@105 405 }
mas01cr@105 406
mas01cr@105 407 if(args_info.BATCHINSERT_given){
mas01cr@105 408 command=COM_BATCHINSERT;
mas01cr@105 409 dbName=args_info.database_arg;
mas01cr@105 410 inFile=args_info.featureList_arg;
mas01cr@105 411 if(args_info.keyList_given)
mas01tc@298 412 if(!args_info.featureList_given)
mas01tc@300 413 error("BATCHINSERT: '-K keyList' argument depends on '-F featureList'");
mas01mc@292 414 else
mas01cr@304 415 key=args_info.keyList_arg; // INCONSISTENT NO CHECK
mas01cr@0 416
mas01cr@105 417 /* TO DO: REPLACE WITH
mas01cr@0 418 if(args_info.keyList_given){
mas01mc@18 419 trackFileName=args_info.keyList_arg;
mas01cr@239 420 if(strlen(trackFileName)>0 && !(trackFile = new std::ifstream(trackFileName,std::ios::in)))
mas01mc@18 421 error("Could not open keyList file for reading",trackFileName);
mas01cr@0 422 }
mas01cr@0 423 AND UPDATE BATCHINSERT()
mas01cr@105 424 */
mas01cr@105 425
mas01cr@105 426 if(args_info.timesList_given){
mas01cr@105 427 timesFileName=args_info.timesList_arg;
mas01cr@105 428 if(strlen(timesFileName)>0){
mas01cr@239 429 if(!(timesFile = new std::ifstream(timesFileName,std::ios::in)))
mas01cr@105 430 error("Could not open timesList file for reading", timesFileName);
mas01cr@105 431 usingTimes=1;
mas01cr@105 432 }
mas01cr@105 433 }
mas01cr@193 434 if(args_info.powerList_given){
mas01cr@193 435 powerFileName=args_info.powerList_arg;
mas01cr@193 436 if(strlen(powerFileName)>0){
mas01cr@239 437 if(!(powerFile = new std::ifstream(powerFileName,std::ios::in)))
mas01cr@193 438 error("Could not open powerList file for reading", powerFileName);
mas01cr@193 439 usingPower=1;
mas01cr@193 440 }
mas01cr@193 441 }
mas01cr@105 442 return 0;
mas01cr@105 443 }
mas01mc@292 444
mas01mc@292 445 // Set no_unit_norm flag
mas01mc@292 446 no_unit_norming = args_info.no_unit_norming_flag;
mas01mc@292 447 lsh_use_u_functions = args_info.lsh_use_u_functions_flag;
mas01mc@292 448
mas01mc@292 449 // LSH Index Command
mas01mc@292 450 if(args_info.INDEX_given){
mas01mc@292 451 if(radius <= 0 )
mas01mc@292 452 error("INDEXing requires a Radius argument");
mas01mc@292 453 if(!(sequenceLength>0 && sequenceLength <= O2_MAXSEQLEN))
mas01mc@292 454 error("INDEXing requires 1 <= sequenceLength <= 1000");
mas01mc@292 455 command=COM_INDEX;
mas01mc@337 456 if(!args_info.database_given)
mas01mc@337 457 error("INDEXing requires a database");
mas01mc@292 458 dbName=args_info.database_arg;
mas01mc@292 459
mas01mc@292 460 // Whether to store LSH hash tables for query in core (FORMAT2)
mas01mc@297 461 lsh_in_core = !args_info.lsh_on_disk_flag; // This flag is set to 0 if on_disk requested
mas01mc@292 462
mas01mc@292 463 lsh_param_w = args_info.lsh_w_arg;
mas01mc@292 464 if(!(lsh_param_w>0 && lsh_param_w<=O2_SERIAL_MAX_BINWIDTH))
mas01mc@292 465 error("Indexing parameter w out of range (0.0 < w <= 100.0)");
mas01mc@292 466
mas01mc@292 467 lsh_param_k = args_info.lsh_k_arg;
mas01mc@292 468 if(!(lsh_param_k>0 && lsh_param_k<=O2_SERIAL_MAX_FUNS))
mas01mc@292 469 error("Indexing parameter k out of range (1 <= k <= 100)");
mas01mc@292 470
mas01mc@292 471 lsh_param_m = args_info.lsh_m_arg;
mas01mc@292 472 if(!(lsh_param_m>0 && lsh_param_m<= (1 + (sqrt(1 + O2_SERIAL_MAX_TABLES*8.0)))/2.0))
mas01mc@292 473 error("Indexing parameter m out of range (1 <= m <= 20)");
mas01mc@292 474
mas01mc@292 475 lsh_param_N = args_info.lsh_N_arg;
mas01mc@292 476 if(!(lsh_param_N>0 && lsh_param_N<=O2_SERIAL_MAX_ROWS))
mas01mc@292 477 error("Indexing parameter N out of range (1 <= N <= 1000000)");
mas01mc@292 478
mas01mc@292 479 lsh_param_b = args_info.lsh_b_arg;
mas01mc@292 480 if(!(lsh_param_b>0 && lsh_param_b<=O2_SERIAL_MAX_TRACKBATCH))
mas01mc@292 481 error("Indexing parameter b out of range (1 <= b <= 10000)");
mas01mc@292 482
mas01mc@296 483 lsh_param_ncols = args_info.lsh_ncols_arg;
mas01mc@296 484 if(lsh_in_core) // We don't want to block rows with FORMAT2 indexing
mas01mc@296 485 lsh_param_ncols = O2_SERIAL_MAX_COLS;
mas01mc@292 486 if( !(lsh_param_ncols>0 && lsh_param_ncols<=O2_SERIAL_MAX_COLS))
mas01mc@292 487 error("Indexing parameter ncols out of range (1 <= ncols <= 1000");
mas01mc@292 488
mas01mc@292 489 return 0;
mas01mc@292 490 }
mas01mc@292 491
mas01cr@105 492 // Query command and arguments
mas01cr@105 493 if(args_info.QUERY_given){
mas01cr@105 494 command=COM_QUERY;
mas01cr@105 495 dbName=args_info.database_arg;
mas01mc@292 496 // XOR features and key search
mas01mc@292 497 if(!args_info.features_given && !args_info.key_given || (args_info.features_given && args_info.key_given))
mas01mc@292 498 error("QUERY requires exactly one of either -f features or -k key");
mas01mc@292 499 if(args_info.features_given)
mas01mc@292 500 inFile=args_info.features_arg; // query from file
mas01mc@292 501 else{
mas01mc@292 502 query_from_key = true;
mas01mc@292 503 key=args_info.key_arg; // query from key
mas01mc@292 504 }
mas01mc@292 505
mas01cr@105 506 if(args_info.keyList_given){
mas01cr@105 507 trackFileName=args_info.keyList_arg;
mas01cr@239 508 if(strlen(trackFileName)>0 && !(trackFile = new std::ifstream(trackFileName,std::ios::in)))
mas01cr@105 509 error("Could not open keyList file for reading",trackFileName);
mas01cr@105 510 }
mas01cr@105 511
mas01cr@105 512 if(args_info.times_given){
mas01cr@105 513 timesFileName=args_info.times_arg;
mas01cr@105 514 if(strlen(timesFileName)>0){
mas01cr@239 515 if(!(timesFile = new std::ifstream(timesFileName,std::ios::in)))
mas01cr@105 516 error("Could not open times file for reading", timesFileName);
mas01cr@105 517 usingTimes=1;
mas01cr@105 518 }
mas01cr@105 519 }
mas01cr@193 520
mas01cr@193 521 if(args_info.power_given){
mas01cr@193 522 powerFileName=args_info.power_arg;
mas01cr@193 523 if(strlen(powerFileName)>0){
mas01cr@193 524 if (!(powerfd = open(powerFileName, O_RDONLY))) {
mas01cr@193 525 error("Could not open power file for reading", powerFileName, "open");
mas01cr@193 526 }
mas01cr@193 527 usingPower = 1;
mas01cr@193 528 }
mas01cr@193 529 }
mas01cr@105 530
mas01cr@105 531 // query type
mas01cr@105 532 if(strncmp(args_info.QUERY_arg, "track", MAXSTR)==0)
mas01cr@105 533 queryType=O2_TRACK_QUERY;
mas01cr@105 534 else if(strncmp(args_info.QUERY_arg, "point", MAXSTR)==0)
mas01cr@105 535 queryType=O2_POINT_QUERY;
mas01cr@105 536 else if(strncmp(args_info.QUERY_arg, "sequence", MAXSTR)==0)
mas01cr@105 537 queryType=O2_SEQUENCE_QUERY;
mas01mc@248 538 else if(strncmp(args_info.QUERY_arg, "nsequence", MAXSTR)==0)
mas01mc@248 539 queryType=O2_N_SEQUENCE_QUERY;
mas01mc@263 540 else if(strncmp(args_info.QUERY_arg, "onetoonensequence", MAXSTR)==0)
mas01mc@263 541 queryType=O2_ONE_TO_ONE_N_SEQUENCE_QUERY;
mas01cr@105 542 else
mas01cr@105 543 error("unsupported query type",args_info.QUERY_arg);
mas01cr@105 544
mas01cr@105 545 if(!args_info.exhaustive_flag){
mas01cr@105 546 queryPoint = args_info.qpoint_arg;
mas01cr@105 547 usingQueryPoint=1;
mas01cr@105 548 if(queryPoint<0 || queryPoint >10000)
mas01cr@105 549 error("queryPoint out of range: 0 <= queryPoint <= 10000");
mas01cr@105 550 }
mas01mc@292 551
mas01mc@296 552 // Whether to pre-load LSH hash tables for query (default on, if flag set then off)
mas01mc@297 553 lsh_in_core = !args_info.lsh_on_disk_flag;
mas01mc@292 554
mas01mc@292 555 // Whether to perform exact evaluation of points returned by LSH
mas01mc@292 556 lsh_exact = args_info.lsh_exact_flag;
mas01mc@292 557
mas01cr@105 558 pointNN = args_info.pointnn_arg;
mas01mc@263 559 if(pointNN < 1 || pointNN > O2_MAXNN) {
mas01mc@263 560 error("pointNN out of range: 1 <= pointNN <= 1000000");
mas01cr@105 561 }
mas01cr@105 562 trackNN = args_info.resultlength_arg;
mas01mc@263 563 if(trackNN < 1 || trackNN > O2_MAXNN) {
mas01mc@263 564 error("resultlength out of range: 1 <= resultlength <= 1000000");
mas01cr@105 565 }
mas01cr@105 566 return 0;
mas01cr@105 567 }
mas01mc@334 568
mas01mc@334 569 if(args_info.LISZT_given){
mas01mc@334 570 command = COM_LISZT;
mas01mc@334 571 dbName=args_info.database_arg;
mas01mc@334 572 lisztOffset = args_info.lisztOffset_arg;
mas01mc@334 573 lisztLength = args_info.lisztLength_arg;
mas01mc@334 574 if(args_info.lisztOffset_arg<0) // check upper bound later when database is opened
mas01mc@334 575 error("lisztOffset cannot be negative");
mas01mc@334 576 if(args_info.lisztLength_arg<0)
mas01mc@334 577 error("lisztLength cannot be negative");
mas01mc@334 578 if(lisztLength >1000000)
mas01mc@334 579 error("lisztLength too large (>1000000)");
mas01mc@334 580 return 0;
mas01mc@334 581 }
mas01mc@334 582
mas01cr@105 583 return -1; // no command found
mas01cr@0 584 }
mas01cr@0 585
mas01cr@133 586 void audioDB::status(const char* dbName, adb__statusResponse *adbStatusResponse){
mas01cr@0 587 if(!dbH)
mas01cr@196 588 initTables(dbName, 0);
mas01cr@0 589
mas01cr@0 590 unsigned dudCount=0;
mas01cr@0 591 unsigned nullCount=0;
mas01cr@0 592 for(unsigned k=0; k<dbH->numFiles; k++){
mas01mc@18 593 if(trackTable[k]<sequenceLength){
mas01cr@0 594 dudCount++;
mas01mc@18 595 if(!trackTable[k])
mas01cr@76 596 nullCount++;
mas01cr@0 597 }
mas01cr@0 598 }
mas01cr@76 599
mas01cr@133 600 if(adbStatusResponse == 0) {
mas01cr@76 601
mas01cr@76 602 // Update Header information
mas01cr@239 603 std::cout << "num files:" << dbH->numFiles << std::endl;
mas01cr@239 604 std::cout << "data dim:" << dbH->dim <<std::endl;
mas01cr@76 605 if(dbH->dim>0){
mas01cr@239 606 std::cout << "total vectors:" << dbH->length/(sizeof(double)*dbH->dim)<<std::endl;
mas01mc@324 607 if(dbH->flags & O2_FLAG_LARGE_ADB)
mas01mc@324 608 std::cout << "vectors available:" << O2_MAX_VECTORS - (dbH->length / (sizeof(double)*dbH->dim)) << std::endl;
mas01mc@324 609 else
mas01mc@324 610 std::cout << "vectors available:" << (dbH->timesTableOffset-(dbH->dataOffset+dbH->length))/(sizeof(double)*dbH->dim) << std::endl;
mas01cr@76 611 }
mas01mc@324 612 if( ! (dbH->flags & O2_FLAG_LARGE_ADB) ){
mas01mc@324 613 std::cout << "total bytes:" << dbH->length << " (" << (100.0*dbH->length)/(dbH->timesTableOffset-dbH->dataOffset) << "%)" << std::endl;
mas01mc@324 614 std::cout << "bytes available:" << dbH->timesTableOffset-(dbH->dataOffset+dbH->length) << " (" <<
mas01mc@324 615 (100.0*(dbH->timesTableOffset-(dbH->dataOffset+dbH->length)))/(dbH->timesTableOffset-dbH->dataOffset) << "%)" << std::endl;
mas01mc@324 616 }
mas01mc@301 617 std::cout << "flags:" << " l2norm[" << DISPLAY_FLAG(dbH->flags&O2_FLAG_L2NORM)
mas01mc@301 618 << "] minmax[" << DISPLAY_FLAG(dbH->flags&O2_FLAG_MINMAX)
mas01mc@301 619 << "] power[" << DISPLAY_FLAG(dbH->flags&O2_FLAG_POWER)
mas01mc@324 620 << "] times[" << DISPLAY_FLAG(dbH->flags&O2_FLAG_TIMES)
mas01mc@324 621 << "] largeADB[" << DISPLAY_FLAG(dbH->flags&O2_FLAG_LARGE_ADB)
mas01mc@324 622 << "]" << endl;
mas01mc@324 623
mas01cr@239 624 std::cout << "null count: " << nullCount << " small sequence count " << dudCount-nullCount << std::endl;
mas01cr@76 625 } else {
mas01cr@133 626 adbStatusResponse->result.numFiles = dbH->numFiles;
mas01cr@133 627 adbStatusResponse->result.dim = dbH->dim;
mas01cr@133 628 adbStatusResponse->result.length = dbH->length;
mas01cr@133 629 adbStatusResponse->result.dudCount = dudCount;
mas01cr@133 630 adbStatusResponse->result.nullCount = nullCount;
mas01cr@133 631 adbStatusResponse->result.flags = dbH->flags;
mas01cr@76 632 }
mas01cr@0 633 }
mas01cr@0 634
mas01cr@196 635 void audioDB::l2norm(const char* dbName) {
mas01cr@196 636 forWrite = true;
mas01cr@196 637 initTables(dbName, 0);
mas01mc@324 638 if( !(dbH->flags & O2_FLAG_LARGE_ADB ) && (dbH->length>0) ){
mas01cr@196 639 /* FIXME: should probably be uint64_t */
mas01cr@0 640 unsigned numVectors = dbH->length/(sizeof(double)*dbH->dim);
mas01cr@196 641 CHECKED_MMAP(double *, dataBuf, dbH->dataOffset, dataBufLength);
mas01cr@0 642 unitNormAndInsertL2(dataBuf, dbH->dim, numVectors, 0); // No append
mas01cr@0 643 }
mas01cr@0 644 // Update database flags
mas01cr@0 645 dbH->flags = dbH->flags|O2_FLAG_L2NORM;
mas01cr@0 646 memcpy (db, dbH, O2_HEADERSIZE);
mas01cr@0 647 }
mas01cr@193 648
mas01cr@193 649 void audioDB::power_flag(const char *dbName) {
mas01cr@196 650 forWrite = true;
mas01mc@324 651 initTables(dbName, 0);
mas01mc@324 652 if( !(dbH->flags & O2_FLAG_LARGE_ADB ) && (dbH->length>0) ){
mas01cr@193 653 error("cannot turn on power storage for non-empty database", dbName);
mas01cr@193 654 }
mas01cr@193 655 dbH->flags |= O2_FLAG_POWER;
mas01cr@193 656 memcpy(db, dbH, O2_HEADERSIZE);
mas01cr@193 657 }
mas01cr@193 658
mas01cr@239 659 // Unit norm block of features
mas01cr@0 660
mas01cr@239 661 /* FIXME: in fact this does not unit norm a block of features, it just
mas01cr@239 662 records the L2 norms somewhere. unitNorm() does in fact unit norm
mas01cr@239 663 a block of features. */
mas01cr@0 664 void audioDB::unitNormAndInsertL2(double* X, unsigned dim, unsigned n, unsigned append=0){
mas01cr@0 665 unsigned d;
mas01cr@59 666 double *p;
mas01cr@0 667 unsigned nn = n;
mas01cr@0 668
mas01cr@0 669 assert(l2normTable);
mas01cr@0 670
mas01mc@324 671 if( !(dbH->flags & O2_FLAG_LARGE_ADB) && !append && (dbH->flags & O2_FLAG_L2NORM) )
mas01cr@0 672 error("Database is already L2 normed", "automatic norm on insert is enabled");
mas01cr@0 673
mas01cr@239 674 VERB_LOG(2, "norming %u vectors...", n);
mas01cr@0 675
mas01cr@0 676 double* l2buf = new double[n];
mas01cr@0 677 double* l2ptr = l2buf;
mas01cr@0 678 assert(l2buf);
mas01cr@0 679 assert(X);
mas01cr@0 680
mas01cr@0 681 while(nn--){
mas01cr@0 682 p=X;
mas01cr@0 683 *l2ptr=0.0;
mas01cr@0 684 d=dim;
mas01cr@0 685 while(d--){
mas01cr@0 686 *l2ptr+=*p**p;
mas01cr@0 687 p++;
mas01cr@0 688 }
mas01mc@17 689 l2ptr++;
mas01mc@17 690 X+=dim;
mas01cr@0 691 }
mas01cr@0 692 unsigned offset;
mas01cr@84 693 if(append) {
mas01cr@84 694 // FIXME: a hack, a very palpable hack: the vectors have already
mas01cr@84 695 // been inserted, and dbH->length has already been updated. We
mas01cr@84 696 // need to subtract off again the number of vectors that we've
mas01cr@84 697 // inserted this time...
mas01cr@84 698 offset=(dbH->length/(dbH->dim*sizeof(double)))-n; // number of vectors
mas01cr@84 699 } else {
mas01cr@0 700 offset=0;
mas01cr@84 701 }
mas01cr@0 702 memcpy(l2normTable+offset, l2buf, n*sizeof(double));
mas01cr@0 703 if(l2buf)
mas01mc@17 704 delete[] l2buf;
mas01cr@239 705 VERB_LOG(2, " done.");
mas01cr@193 706 }
mas01cr@193 707
mas01mc@308 708 // This entry point is visited once per instance
mas01mc@308 709 // so it is a good place to set any global state variables
mas01cr@0 710 int main(const unsigned argc, char* const argv[]){
mas01mc@308 711 SERVER_LSH_INDEX_SINGLETON = 0; // Initialize global variables
mas01mc@324 712 SERVER_ADB_ROOT = 0; // Server-side database root prefix
mas01mc@324 713 SERVER_ADB_FEATURE_ROOT = 0; // Server-side features root prefix
mas01cr@0 714 audioDB(argc, argv);
mas01cr@0 715 }