diff pdfextract/makeOwlGraph.py @ 1:365a37a2fb6c

added files from pdfextract directory

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pdfextract/makeOwlGraph.py	Mon Feb 25 14:47:41 2013 +0000
@@ -0,0 +1,859 @@
+import rdflib, os, fnmatch, urllib2
+from rdflib import Graph, RDF, RDFS, plugin, URIRef, Literal, OWL
+from xml.dom.minidom import parseString
+
+names = [line.strip() for line in open('pdfextract/names.txt')]
+cat = [line.strip() for line in open('pdfextract/categories.txt')]
+sig = [line.strip() for line in open('pdfextract/sig.txt')]
+
+local = 'http://sovarr.c4dm.eecs.qmul.ac.uk/features/'
+
+afgr = Graph()
+afgr.bind('local', URIRef(local))
+afgr.bind('dc', URIRef('http://purl.org/dc/elements/1.1/'))
+afgr.bind('owl', URIRef('http://www.w3.org/2002/07/owl#'))
+
+# def split_uppercase(string): 
+#     x='' 
+#     for i in string: 
+#         if i.isupper(): 
+#             x+=' %s' %i 
+#         else: 
+#             x+=i 
+#     return x.strip()
+
+i = 0
+
+order = [
+    "Zero Crossing Rate", 
+    "Linear Predictive Coding", 
+    "Mel-scale Frequency Cepstral Coefficients", 
+    "Auditory Filter Bank Temporal Envelopes",
+    "Rate-scale-frequency Features",
+    "Phase Space Features"
+]
+
+domains = {
+    "Zero Crossing Rate": 'temporal',
+    "Linear Predictive Coding": 'frequency',
+    "Mel-scale Frequency Cepstral Coefficients": 'cepstral',
+    "Auditory Filter Bank Temporal Envelopes": 'modulation frequency',
+    "Rate-scale-frequency Features": 'eigendomain',
+    "Phase Space Features": 'phase space'
+}
+
+abbr = {
+	"Zero Crossing Rate": "ZCR",
+	"Mel-scale Frequency Cepstral Coefficients": "MFCC",
+    "Linear Predictive Coding": "LPC",
+    "Linear Prediction Cepstral Coefficients": "LPCC",
+    "Zero crossing peak amplitudes": "ZCPA",
+    "Line spectral frequencies": "LSF",
+    "Short-time energy": "STE",
+    "Amplitude descriptor":  "AD",
+    "Adaptive time frequency transform": "ATFT",
+    "Daubechies Wavelet coefficient histogram": "DWCH",
+    "Spectral Flux": "SF",
+    "Group delay function": "GDF",
+    "Modified group delay function": "MGDF",
+    "Spectral centroid": "SC",
+    "Subband spectral flux": "SSF",
+    "Perceptual linear prediction": "PLP"
+}
+
+
+domain = ""
+domainIndex = 0
+compdict = {}
+
+for filename in ['filters', 'trans', 'aggr']:
+    for line in [line.strip() for line in open('pdfextract/' + filename + '.txt')]:
+        compdict[line[0]] = line[2:]
+        
+
+            
+for name in names:
+    id = local + (name.replace(' ','').replace('-',''))
+    
+    if name == order[domainIndex]:
+        domain = domains[order[domainIndex]]
+        domainIndex += 1
+    
+    afgr.add(( URIRef(id),        
+        URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+        URIRef(OWL.Class)  
+    ))
+    
+    afgr.add(( 
+        URIRef(id), 
+        URIRef(local + 'feature'), 
+        Literal(name.replace(' ','').replace('-','')) 
+    ))
+
+    afgr.add(( 
+        URIRef(id), 
+        URIRef(local + 'domain'), 
+        Literal(domain) 
+    ))
+
+    word = cat[i].split(' ')
+
+    temp = {
+        'I': 'intraframe',
+        'X': 'interframe',
+        'G': 'global'
+    }[word[0]]
+
+    afgr.add(( 
+        URIRef(id), 
+        URIRef(local + 'temporalscale'), 
+        Literal(temp) 
+    ))
+    
+    
+    if word[1] == 'Y': 
+        temp = 'perceptual'
+    else:
+        temp = 'physical'
+        
+    afgr.add((
+        URIRef(id), 
+        URIRef(local + 'level'), 
+        Literal(temp) 
+    ))
+        
+    if word[2] == 'Y':
+        afgr.add((
+            URIRef(id), 
+            URIRef(local + 'model'), 
+            Literal('psychoacoustic') 
+        ))
+        
+    temp = {
+        'L': 'low',
+        'M': 'medium',
+        'H': 'high'
+    }[word[3]]
+    
+    afgr.add(( 
+        URIRef(id),
+        URIRef(local + 'complexity'), 
+        Literal(temp) 
+    ))
+    
+    if word[4] == 'V':
+        temp = 'parameterized'
+    else:
+        temp = word[4]
+        
+    afgr.add(( 
+        URIRef(id),
+        URIRef(local + 'dimensions'), 
+        Literal(temp) 
+    ))
+    
+    temp = {
+        'ASR': "speech recognition",
+        'ESR': "environmental sound recognition",
+        'MIR': "music information retrieval",
+        'AS': "audio segmentation",
+        'FP': "fingerprinting",
+        'VAR': "several",
+        'EXC': ''
+    }[word[5]]
+
+    if temp != '':   
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'appdomain'), 
+            Literal(temp) 
+        ))
+        
+    steps = sig[i].split(' ')
+    
+    for key in steps:
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'computation'), 
+            Literal(compdict[key]) 
+        ))
+        
+    if name.find('MPEG-7') >= 0:
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('MPEG-7')
+        ))
+    
+    if name in abbr.keys():
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'abbreviation'),
+            Literal(abbr[name])
+        ))
+        
+    
+    i += 1
+
+
+execfile('/Users/alo/Downloads/python-Levenshtein-0.10.2/StringMatcher.py')
+
+############# Vamp ###############
+
+
+vamp = Graph()
+vamp.parse('/Users/alo/Development/qm/qm-vamp-plugins/qm-vamp-plugins.n3', format='n3')
+
+vampdict = {}
+
+current = afgr
+
+for s, p, o in vamp.triples((None, None, URIRef('http://purl.org/ontology/vamp/Plugin'))):
+    for vs, vp, vo in vamp.triples((s, URIRef('http://purl.org/ontology/vamp/name'), None )):
+        score = 100
+        vampdict[vo] = {'score': 0, 'name': ""}
+        for s, p, o in current.triples((None, None, RDFS.Resource)):
+            for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+                m = StringMatcher()
+                m.set_seqs(vo, name)
+                sc = float(m.distance()) / ((len(vo) + len(name)) / 2.0)
+                if sc < score:
+                    vampdict[vo]['score'] = 1.0 - sc
+                    vampdict[vo]['name'] = name
+                    score = sc
+
+for k in vampdict.keys():
+    if vampdict[k]['score'] > 0.75:
+        name = vampdict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('Vamp Plugins')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),        
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k.replace(" ", "")) 
+        ))
+        
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('Vamp Plugins')
+        ))
+        
+
+############# Marsyas ###############
+
+
+mdir = '/Users/alo/Development/MIR/marsyas-0.4.7/src/marsyas/'
+
+madict = {}
+
+for name in os.listdir(mdir):
+    if fnmatch.fnmatch(name, '*.h'):
+        code = [line.strip() for line in open(mdir + name)]
+        found = False
+        for line in code:
+            if line.find('\ingroup Analysis') >= 0:
+                found = True
+                break
+        
+        if found:
+            i = 0
+            cl = ''
+            for line in code:
+                if line.find('\class') >= 0:
+                    cl = line.split(' ')[-1]
+                    madict[cl] = {'brief': code[i+2][7:]} 
+                    if code[i+3] != '':
+                        madict[cl]['brief'] += code[i+3]
+                        
+                    break
+                    
+                i += 1
+
+                
+            score = 100
+            madict[cl]['score'] = 0
+            madict[cl]['name'] = ""
+            for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
+                for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+                    m = StringMatcher()
+                    m.set_seqs(Literal(cl), name)
+                    sc = float(m.distance()) / ((len(cl) + len(name)) / 2.0)
+                    if sc < score:
+                        madict[cl]['score'] = 1.0 - sc
+                        madict[cl]['name'] = name
+                        score = sc
+            
+            if madict[cl]['score'] < 0.75:                
+                for k in abbr.keys():
+                    if abbr[k] == cl:
+                        madict[cl]['score'] = 1.0
+                        madict[cl]['name'] = k
+
+
+for k in madict.keys():
+    if madict[k]['score'] > 0.75:
+        name = madict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('Marsyas')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k) 
+        ))
+
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'description'), 
+            Literal(madict[k]['brief']) 
+        ))
+                
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('Marsyas')
+        ))
+
+
+
+############# jMIR ###############
+
+jdir = '/Users/alo/Development/MIR/jAudio/jAudio/'
+
+jdict = {}
+
+file = urllib2.urlopen('file://' + jdir + 'features.xml')
+data = file.read()
+file.close()
+
+dom = parseString(data)
+jmir = dom.getElementsByTagName('feature')
+
+for nodes in jmir:
+    jname = nodes.childNodes[1].firstChild.nodeValue.split('.')[-1]
+    jdict[jname] = {'score': 0, 'name': ""} 
+#    if len(nodes.childNodes) == 5:
+#        print nodes.childNodes[3]
+    score = 100
+
+    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
+        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+            m = StringMatcher()
+            m.set_seqs(Literal(jname), name)
+            sc = float(m.distance()) / ((len(jname) + len(name)) / 2.0)
+            if sc < score:
+                jdict[jname]['score'] = 1.0 - sc
+                jdict[jname]['name'] = name
+                score = sc
+            
+    if jdict[jname]['score'] < 0.75:                
+        for k in abbr.keys():
+            if abbr[k] == jname:
+                jdict[jname]['score'] = 1.0
+                jdict[jname]['name'] = k
+
+for k in jdict.keys():
+    if jdict[k]['score'] > 0.75:
+        name = jdict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('jMIR')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),        
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k) 
+        ))
+                
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('jMIR')
+        ))
+
+
+
+############# libXtract ###############
+
+
+path = '/Users/alo/Development/MIR/LibXtract/xtract/libxtract.h'
+
+lines = [line.strip() for line in open(path)]
+
+xtract = lines[(lines.index('enum xtract_features_ {')+1):(lines.index('XTRACT_WINDOWED')-1)]
+
+xdict = {}
+
+for ln in xtract:
+    xname = ln[(ln.index('_')+1):-1].replace("_", " ").lower().capitalize()
+    xdict[xname] = {'score': 0, 'name': ""}
+    
+    score = 100
+
+    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
+        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+            m = StringMatcher()
+            m.set_seqs(Literal(xname), name)
+            sc = float(m.distance()) / ((len(xname) + len(name)) / 2.0)
+            if sc < score:
+                xdict[xname]['score'] = 1.0 - sc
+                xdict[xname]['name'] = name
+                score = sc
+            
+    if xdict[xname]['score'] < 0.75:                
+        for k in abbr.keys():
+            if abbr[k] == xname.upper():
+                xdict[xname]['score'] = 1.0
+                xdict[xname]['name'] = k
+
+for k in xdict.keys():
+    if xdict[k]['score'] > 0.75:
+        name = xdict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('libXtract')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),        
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k.replace(" ", "").replace("-", "")) 
+        ))
+                
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('libXtract')
+        ))
+
+
+
+############# yaafe ###############
+
+path = "/Users/alo/Development/MIR/yaafe-v0.64/src_python/yaafefeatures.py"
+
+lines = [line.strip() for line in open(path)]
+
+ydict = {}
+
+for ln in lines:
+    if ln.find('class ') >= 0:
+        yname = ln[6:ln.find('(AudioFeature)')]
+        
+        ydict[yname] = {'score': 0, 'name': ""}
+    
+        score = 100
+
+        for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
+            for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+                m = StringMatcher()
+                m.set_seqs(Literal(yname), name)
+                sc = float(m.distance()) / ((len(yname) + len(name)) / 2.0)
+                if sc < score:
+                    ydict[yname]['score'] = 1.0 - sc
+                    ydict[yname]['name'] = name
+                    score = sc
+            
+        if ydict[yname]['score'] < 0.75:                
+            for k in abbr.keys():
+                if abbr[k] == yname:
+                    ydict[yname]['score'] = 1.0
+                    ydict[yname]['name'] = k
+
+for k in ydict.keys():
+    if ydict[k]['score'] > 0.75:
+        name = ydict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('yaafe')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),        
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k) 
+        ))
+                
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('yaafe')
+        ))
+
+############# MIRToolbox ###############
+
+path = "/Users/alo/MusicOntology/features/rdf/af-MIRToolbox.rdf"
+mirt = Graph()
+mirt.parse(path)
+
+mdict = {}
+
+for s, p, o in mirt.triples((None, None, RDFS.Resource)):
+    mname = s.split('/')[-1]
+    mdict[mname] = {'score': 0, 'name':"", 'sub': s}
+    
+    score = 100
+
+    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
+        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+            m = StringMatcher()
+            m.set_seqs(Literal(mname), name)
+            sc = float(m.distance()) / ((len(mname) + len(name)) / 2.0)
+            if sc < score:
+                mdict[mname]['score'] = 1.0 - sc
+                mdict[mname]['name'] = name
+                score = sc
+            
+    if mdict[mname]['score'] < 0.75:                
+        for k in abbr.keys():
+            if abbr[k] == mname:
+                mdict[mname]['score'] = 1.0
+                mdict[mname]['name'] = k
+    
+    
+for k in mdict.keys():
+    if mdict[k]['score'] > 0.77:
+        name = mdict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('MIRToolbox')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),        
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k) 
+        ))
+                
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('MIRToolbox')
+        ))
+        
+    for s, p, o in mirt.triples((mdict[k]['sub'], None, None)):
+        if o != RDFS.Resource:
+            afgr.add((URIRef(id), p, o))
+        
+
+############# CLAM ###############
+
+path = "/Users/alo/MusicOntology/features/rdf/af-CLAM.rdf"
+clam = Graph()
+clam.parse(path)
+
+cdict = {}
+
+for s, p, o in clam.triples((None, None, RDFS.Resource)):
+    cname = s.split('/')[-1]
+    cdict[cname] = {'score': 0, 'name':"", 'sub': s}
+    
+    score = 100
+
+    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
+        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+            m = StringMatcher()
+            m.set_seqs(Literal(cname), name)
+            sc = float(m.distance()) / ((len(cname) + len(name)) / 2.0)
+            if sc < score:
+                cdict[cname]['score'] = 1.0 - sc
+                cdict[cname]['name'] = name
+                score = sc
+            
+    if cdict[cname]['score'] < 0.75:                
+        for k in abbr.keys():
+            if abbr[k] == cname:
+                cdict[cname]['score'] = 1.0
+                cdict[cname]['name'] = k
+    
+for k in cdict.keys():
+    if cdict[k]['score'] > 0.77:
+        name = cdict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('CLAM')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),        
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k) 
+        ))
+                
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('CLAM')
+        ))
+        
+    for s, p, o in clam.triples((cdict[k]['sub'], None, None)):
+        if o != RDFS.Resource:
+            afgr.add((URIRef(id), p, o))
+
+
+############# SCMIR ###############
+
+path = "/Users/alo/MusicOntology/features/rdf/af-SuperCollider.rdf"
+scg = Graph()
+scg.parse(path)
+
+scdict = {}
+
+for s, p, o in scg.triples((None, None, RDFS.Resource)):
+    scname = s.split('/')[-1]
+    scdict[scname] = {'score': 0, 'name':"", 'sub': s}
+    
+    score = 100
+
+    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
+        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+            m = StringMatcher()
+            m.set_seqs(Literal(scname), name)
+            sc = float(m.distance()) / ((len(scname) + len(name)) / 2.0)
+            if sc < score:
+                scdict[scname]['score'] = 1.0 - sc
+                scdict[scname]['name'] = name
+                score = sc
+            
+    if scdict[scname]['score'] < 0.75:                
+        for k in abbr.keys():
+            if abbr[k] == scname:
+                scdict[scname]['score'] = 1.0
+                scdict[scname]['name'] = k
+    
+for k in scdict.keys():
+    if scdict[k]['score'] > 0.77:
+        name = scdict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('SuperCollider')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),        
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k) 
+        ))
+                
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('SuperCollider')
+        ))
+        
+    for s, p, o in scg.triples((scdict[k]['sub'], None, None)):
+        if o != RDFS.Resource:
+            afgr.add((URIRef(id), p, o))
+
+
+############# aubio ###############
+path = "/Users/alo/MusicOntology/features/rdf/af-aubio.rdf"
+aug = Graph()
+aug.parse(path)
+
+audict = {}
+
+for s, p, o in aug.triples((None, None, RDFS.Resource)):
+    auname = s.split('/')[-1]
+    audict[auname] = {'score': 0, 'name':"", 'sub': s}
+    
+    score = 100
+
+    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
+        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+            m = StringMatcher()
+            m.set_seqs(Literal(auname), name)
+            au = float(m.distance()) / ((len(auname) + len(name)) / 2.0)
+            if au < score:
+                audict[auname]['score'] = 1.0 - au
+                audict[auname]['name'] = name
+                score = au
+            
+    if audict[auname]['score'] < 0.75:                
+        for k in abbr.keys():
+            if abbr[k] == auname:
+                audict[auname]['score'] = 1.0
+                audict[auname]['name'] = k
+    
+for k in audict.keys():
+    if audict[k]['score'] > 0.77:
+        name = audict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('Aubio')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),        
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k) 
+        ))
+                
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('Aubio')
+        ))
+        
+    for s, p, o in aug.triples((audict[k]['sub'], None, None)):
+        if o != RDFS.Resource:
+            afgr.add((URIRef(id), p, o))
+
+
+############# sMIRk ###############
+path = "/Users/alo/MusicOntology/features/rdf/af-smirk.rdf"
+smg = Graph()
+smg.parse(path)
+
+smdict = {}
+
+for s, p, o in smg.triples((None, None, RDFS.Resource)):
+    smname = s.split('/')[-1]
+    smdict[smname] = {'score': 0, 'name':"", 'sub': s}
+    
+    score = 100
+
+    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
+        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
+            m = StringMatcher()
+            m.set_seqs(Literal(smname), name)
+            sm = float(m.distance()) / ((len(smname) + len(name)) / 2.0)
+            if sm < score:
+                smdict[smname]['score'] = 1.0 - sm
+                smdict[smname]['name'] = name
+                score = sm
+            
+    if smdict[smname]['score'] < 0.75:                
+        for k in abbr.keys():
+            if abbr[k] == smname:
+                smdict[smname]['score'] = 1.0
+                smdict[smname]['name'] = k
+    
+for k in smdict.keys():
+    if smdict[k]['score'] > 0.77:
+        name = smdict[k]['name']
+        id = local + (name.replace(' ','').replace('-',''))
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('sMIRk')
+        ))
+    else:
+        id = local + (k.replace(' ','').replace('-',''))
+        afgr.add(( URIRef(id),        
+            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
+            URIRef(OWL.Class)  
+        ))
+    
+        afgr.add(( 
+            URIRef(id), 
+            URIRef(local + 'feature'), 
+            Literal(k) 
+        ))
+                
+        afgr.add(( 
+            URIRef(id),
+            URIRef(local + 'computedIn'),
+            Literal('sMIRk')
+        ))
+        
+    for s, p, o in smg.triples((smdict[k]['sub'], None, None)):
+        if o != RDFS.Resource:
+            afgr.add((URIRef(id), p, o))
+
+
+############ check similarities ###############
+for s, p, o in afgr.triples((None, None, OWL.Class)):
+    for ss, pp, oo in afgr.triples((None, None, OWL.Class)):
+        it = s.split('/')[-1] 
+        other = ss.split('/')[-1]
+        if s != ss:
+            m = StringMatcher()
+            m.set_seqs(it, other)
+            score = float(m.distance()) / ((len(it) + len(other)) / 2.0)
+            if score < 0.25:
+                print score
+                afgr.add((s, URIRef(local + 'similarTo'), ss))
+
+
+afgr.serialize('/Users/alo/MusicOntology/features/featuresCatalogue.n3', format='n3')
+afgr.serialize('/Users/alo/MusicOntology/features/featuresCatalogue.rdf')
\ No newline at end of file