annotate pdfextract/makeAFOwlGraph.py @ 18:d5012016bf64 tip

added rdfpy and rdfonto directories

import rdflib, os, fnmatch, urllib2
from rdflib import Graph, RDF, RDFS, plugin, URIRef, Literal, OWL
from xml.dom.minidom import parseString

names = [line.strip() for line in open('pdfextract/names.txt')]
cat = [line.strip() for line in open('pdfextract/categories.txt')]
sig = [line.strip() for line in open('pdfextract/sig.txt')]

local = 'http://sovarr.c4dm.eecs.qmul.ac.uk/features/'

afgr = Graph()
afgr.bind('af', URIRef(local))
afgr.bind('dc', URIRef('http://purl.org/dc/elements/1.1/'))
afgr.bind('owl', URIRef('http://www.w3.org/2002/07/owl#'))

def split_uppercase(string): 
    x='' 
    for i in string: 
        if i.isupper(): 
            x+=' %s' %i 
        else: 
            x+=i 
    return x.strip()


i = 0

order = [
    "Zero Crossing Rate", 
    "Linear Predictive Coding", 
    "Mel-scale Frequency Cepstral Coefficients", 
    "Auditory Filter Bank Temporal Envelopes",
    "Rate-scale-frequency Features",
    "Phase Space Features"
]

domains = {
    "Zero Crossing Rate": 'temporal',
    "Linear Predictive Coding": 'frequency',
    "Mel-scale Frequency Cepstral Coefficients": 'cepstral',
    "Auditory Filter Bank Temporal Envelopes": 'modulation frequency',
    "Rate-scale-frequency Features": 'eigendomain',
    "Phase Space Features": 'phase space'
}

abbr = {
	"Zero Crossing Rate": "ZCR",
	"Mel-scale Frequency Cepstral Coefficients": "MFCC",
    "Linear Predictive Coding": "LPC",
    "Linear Prediction Cepstral Coefficients": "LPCC",
    "Zero crossing peak amplitudes": "ZCPA",
    "Line spectral frequencies": "LSF",
    "Short-time energy": "STE",
    "Amplitude descriptor":  "AD",
    "Adaptive time frequency transform": "ATFT",
    "Daubechies Wavelet coefficient histogram": "DWCH",
    "Spectral Flux": "SF",
    "Group delay function": "GDF",
    "Modified group delay function": "MGDF",
    "Spectral centroid": "SC",
    "Subband spectral flux": "SSF",
    "Perceptual linear prediction": "PLP"
}


domain = ""
domainIndex = 0
compdict = {}

for filename in ['filters', 'trans', 'aggr']:
    for line in [line.strip() for line in open('pdfextract/' + filename + '.txt')]:
        compdict[line[0]] = line[2:]
        

            
for name in names:
    id = local + (name.replace(' ','').replace('-',''))
    
    if name == order[domainIndex]:
        domain = domains[order[domainIndex]]
        domainIndex += 1

'''    
    afgr.add(( URIRef(id),        
        URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
        URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
    ))
'''    
    afgr.add((
        URIRef(id),
        URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'),
        OWL.Class
    ))
    
    afgr.add(( 
        URIRef(id), 
        URIRef(local + 'feature'), 
        Literal(name) 
    ))

    afgr.add(( 
        URIRef(id), 
        URIRef(local + 'domain'), 
        Literal(domain) 
    ))

    word = cat[i].split(' ')

    temp = {
        'I': 'intraframe',
        'X': 'interframe',
        'G': 'global'
    }[word[0]]

    afgr.add(( 
        URIRef(id), 
        URIRef(local + 'temporalscale'), 
        Literal(temp) 
    ))
    
    
    if word[1] == 'Y': 
        temp = 'perceptual'
    else:
        temp = 'physical'
        
    afgr.add((
        URIRef(id), 
        URIRef(local + 'level'), 
        Literal(temp) 
    ))
        
    if word[2] == 'Y':
        afgr.add((
            URIRef(id), 
            URIRef(local + 'model'), 
            Literal('psychoacoustic') 
        ))
        
    temp = {
        'L': 'low',
        'M': 'medium',
        'H': 'high'
    }[word[3]]
    
    afgr.add(( 
        URIRef(id),
        URIRef(local + 'complexity'), 
        Literal(temp) 
    ))
    
    if word[4] == 'V':
        temp = 'parameterized'
    else:
        temp = word[4]
        
    afgr.add(( 
        URIRef(id),
        URIRef(local + 'dimensions'), 
        Literal(temp) 
    ))
    
    temp = {
        'ASR': "speech recognition",
        'ESR': "environmental sound recognition",
        'MIR': "music information retrieval",
        'AS': "audio segmentation",
        'FP': "fingerprinting",
        'VAR': "several",
        'EXC': ''
    }[word[5]]

    if temp != '':   
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'appdomain'), 
            Literal(temp) 
        ))
        
    steps = sig[i].split(' ')
    
    for key in steps:
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'computation'), 
            Literal(compdict[key]) 
        ))
        
    if name.find('MPEG-7') >= 0:
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('MPEG-7')
        ))
    
    if name in abbr.keys():
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'abbreviation'),
            Literal(abbr[name])
        ))
        
    
    i += 1


execfile('/Users/alo/Downloads/python-Levenshtein-0.10.2/StringMatcher.py')

############# Vamp ###############


vamp = Graph()
vamp.parse('/Users/alo/Development/qm/qm-vamp-plugins/qm-vamp-plugins.n3', format='n3')

vampdict = {}

current = afgr

for s, p, o in vamp.triples((None, None, URIRef('http://purl.org/ontology/vamp/Plugin'))):
    for vs, vp, vo in vamp.triples((s, URIRef('http://purl.org/ontology/vamp/name'), None )):
        score = 100
        vampdict[vo] = {'score': 0, 'name': ""}
        for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
            for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
                m = StringMatcher()
                m.set_seqs(vo, name)
                sc = float(m.distance()) / ((len(vo) + len(name)) / 2.0)
                if sc < score:
                    vampdict[vo]['score'] = 1.0 - sc
                    vampdict[vo]['name'] = name
                    score = sc

for k in vampdict.keys():
    if vampdict[k]['score'] > 0.75:
        name = vampdict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('Vamp Plugins')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),        
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(k) 
        ))
        
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('Vamp Plugins')
        ))
        

############# Marsyas ###############


mdir = '/Users/alo/Development/MIR/marsyas-0.4.7/src/marsyas/'

madict = {}

for name in os.listdir(mdir):
    if fnmatch.fnmatch(name, '*.h'):
        code = [line.strip() for line in open(mdir + name)]
        found = False
        for line in code:
            if line.find('\ingroup Analysis') >= 0:
                found = True
                break
        
        if found:
            i = 0
            cl = ''
            for line in code:
                if line.find('\class') >= 0:
                    cl = line.split(' ')[-1]
                    madict[cl] = {'brief': code[i+2][7:]} 
                    if code[i+3] != '':
                        madict[cl]['brief'] += code[i+3]
                        
                    break
                    
                i += 1

                
            score = 100
            madict[cl]['score'] = 0
            madict[cl]['name'] = ""
            for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
                for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
                    m = StringMatcher()
                    m.set_seqs(Literal(cl), name)
                    sc = float(m.distance()) / ((len(cl) + len(name)) / 2.0)
                    if sc < score:
                        madict[cl]['score'] = 1.0 - sc
                        madict[cl]['name'] = name
                        score = sc
            
            if madict[cl]['score'] < 0.75:                
                for k in abbr.keys():
                    if abbr[k] == cl:
                        madict[cl]['score'] = 1.0
                        madict[cl]['name'] = k


for k in madict.keys():
    if madict[k]['score'] > 0.75:
        name = madict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('Marsyas')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(k) 
        ))

        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'description'), 
            Literal(madict[k]['brief']) 
        ))
                
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('Marsyas')
        ))



############# jMIR ###############

jdir = '/Users/alo/Development/MIR/jAudio/jAudio/'

jdict = {}

file = urllib2.urlopen('file://' + jdir + 'features.xml')
data = file.read()
file.close()

dom = parseString(data)
jmir = dom.getElementsByTagName('feature')

for nodes in jmir:
    jname = nodes.childNodes[1].firstChild.nodeValue.split('.')[-1]
    jdict[jname] = {'score': 0, 'name': ""} 
#    if len(nodes.childNodes) == 5:
#        print nodes.childNodes[3]
    score = 100

    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
            m = StringMatcher()
            m.set_seqs(Literal(jname), name)
            sc = float(m.distance()) / ((len(jname) + len(name)) / 2.0)
            if sc < score:
                jdict[jname]['score'] = 1.0 - sc
                jdict[jname]['name'] = name
                score = sc
            
    if jdict[jname]['score'] < 0.75:                
        for k in abbr.keys():
            if abbr[k] == jname:
                jdict[jname]['score'] = 1.0
                jdict[jname]['name'] = k

for k in jdict.keys():
    if jdict[k]['score'] > 0.75:
        name = jdict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('jMIR')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),        
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(k) 
        ))
                
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('jMIR')
        ))



############# libXtract ###############


path = '/Users/alo/Development/MIR/LibXtract/xtract/libxtract.h'

lines = [line.strip() for line in open(path)]

xtract = lines[(lines.index('enum xtract_features_ {')+1):(lines.index('XTRACT_WINDOWED')-1)]

xdict = {}

for ln in xtract:
    xname = ln[(ln.index('_')+1):-1].replace("_", " ").lower()
    xdict[xname] = {'score': 0, 'name': ""}
    
    score = 100

    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
            m = StringMatcher()
            m.set_seqs(Literal(xname), name)
            sc = float(m.distance()) / ((len(xname) + len(name)) / 2.0)
            if sc < score:
                xdict[xname]['score'] = 1.0 - sc
                xdict[xname]['name'] = name
                score = sc
            
    if xdict[xname]['score'] < 0.75:                
        for k in abbr.keys():
            if abbr[k] == xname.upper():
                xdict[xname]['score'] = 1.0
                xdict[xname]['name'] = k

for k in xdict.keys():
    if xdict[k]['score'] > 0.75:
        name = xdict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('libXtract')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),        
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(k) 
        ))
                
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('libXtract')
        ))



############# yaafe ###############

path = "/Users/alo/Development/MIR/yaafe-v0.64/src_python/yaafefeatures.py"

lines = [line.strip() for line in open(path)]

ydict = {}

for ln in lines:
    if ln.find('class ') >= 0:
        yname = ln[6:ln.find('(AudioFeature)')]
        
        ydict[yname] = {'score': 0, 'name': ""}
    
        score = 100

        for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
            for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
                m = StringMatcher()
                m.set_seqs(Literal(yname), name)
                sc = float(m.distance()) / ((len(yname) + len(name)) / 2.0)
                if sc < score:
                    ydict[yname]['score'] = 1.0 - sc
                    ydict[yname]['name'] = name
                    score = sc
            
        if ydict[yname]['score'] < 0.75:                
            for k in abbr.keys():
                if abbr[k] == yname:
                    ydict[yname]['score'] = 1.0
                    ydict[yname]['name'] = k

for k in ydict.keys():
    if ydict[k]['score'] > 0.75:
        name = ydict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('yaafe')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),        
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(k) 
        ))
                
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('yaafe')
        ))

############# MIRToolbox ###############

path = "/Users/alo/MusicOntology/features/rdf/af-MIRToolbox.rdf"
mirt = Graph()
mirt.parse(path)

mdict = {}

for s, p, o in mirt.triples((None, None, RDFS.Resource)):
    mname = s.split('/')[-1]
    mdict[mname] = {'score': 0, 'name':"", 'sub': s}
    
    score = 100

    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
            m = StringMatcher()
            m.set_seqs(Literal(mname), name)
            sc = float(m.distance()) / ((len(mname) + len(name)) / 2.0)
            if sc < score:
                mdict[mname]['score'] = 1.0 - sc
                mdict[mname]['name'] = name
                score = sc
            
    if mdict[mname]['score'] < 0.75:                
        for k in abbr.keys():
            if abbr[k] == mname:
                mdict[mname]['score'] = 1.0
                mdict[mname]['name'] = k
    
    
for k in mdict.keys():
    if mdict[k]['score'] > 0.77:
        name = mdict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('MIRToolbox')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),        
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(split_uppercase(k)) 
        ))
                
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('MIRToolbox')
        ))
        
    for s, p, o in mirt.triples((mdict[k]['sub'], None, None)):
        if o != RDFS.Resource:
            afgr.add((URIRef(id), p, o))
        

############# CLAM ###############

path = "/Users/alo/MusicOntology/features/rdf/af-CLAM.rdf"
clam = Graph()
clam.parse(path)

cdict = {}

for s, p, o in clam.triples((None, None, RDFS.Resource)):
    cname = s.split('/')[-1]
    cdict[cname] = {'score': 0, 'name':"", 'sub': s}
    
    score = 100

    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
            m = StringMatcher()
            m.set_seqs(Literal(cname), name)
            sc = float(m.distance()) / ((len(cname) + len(name)) / 2.0)
            if sc < score:
                cdict[cname]['score'] = 1.0 - sc
                cdict[cname]['name'] = name
                score = sc
            
    if cdict[cname]['score'] < 0.75:                
        for k in abbr.keys():
            if abbr[k] == cname:
                cdict[cname]['score'] = 1.0
                cdict[cname]['name'] = k
    
for k in cdict.keys():
    if cdict[k]['score'] > 0.77:
        name = cdict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('CLAM')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),        
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(split_uppercase(k)) 
        ))
                
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('CLAM')
        ))
        
    for s, p, o in clam.triples((cdict[k]['sub'], None, None)):
        if o != RDFS.Resource:
            afgr.add((URIRef(id), p, o))


############# SCMIR ###############

path = "/Users/alo/MusicOntology/features/rdf/af-SuperCollider.rdf"
scg = Graph()
scg.parse(path)

scdict = {}

for s, p, o in scg.triples((None, None, RDFS.Resource)):
    scname = s.split('/')[-1]
    scdict[scname] = {'score': 0, 'name':"", 'sub': s}
    
    score = 100

    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
            m = StringMatcher()
            m.set_seqs(Literal(scname), name)
            sc = float(m.distance()) / ((len(scname) + len(name)) / 2.0)
            if sc < score:
                scdict[scname]['score'] = 1.0 - sc
                scdict[scname]['name'] = name
                score = sc
            
    if scdict[scname]['score'] < 0.75:                
        for k in abbr.keys():
            if abbr[k] == scname:
                scdict[scname]['score'] = 1.0
                scdict[scname]['name'] = k
    
for k in scdict.keys():
    if scdict[k]['score'] > 0.77:
        name = scdict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('SuperCollider')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),        
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(split_uppercase(k)) 
        ))
                
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('SuperCollider')
        ))
        
    for s, p, o in scg.triples((scdict[k]['sub'], None, None)):
        if o != RDFS.Resource:
            afgr.add((URIRef(id), p, o))


############# aubio ###############
path = "/Users/alo/MusicOntology/features/rdf/af-aubio.rdf"
aug = Graph()
aug.parse(path)

audict = {}

for s, p, o in aug.triples((None, None, RDFS.Resource)):
    auname = s.split('/')[-1]
    audict[auname] = {'score': 0, 'name':"", 'sub': s}
    
    score = 100

    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
            m = StringMatcher()
            m.set_seqs(Literal(auname), name)
            au = float(m.distance()) / ((len(auname) + len(name)) / 2.0)
            if au < score:
                audict[auname]['score'] = 1.0 - au
                audict[auname]['name'] = name
                score = au
            
    if audict[auname]['score'] < 0.75:                
        for k in abbr.keys():
            if abbr[k] == auname:
                audict[auname]['score'] = 1.0
                audict[auname]['name'] = k
    
for k in audict.keys():
    if audict[k]['score'] > 0.77:
        name = audict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('Aubio')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),        
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(split_uppercase(k)) 
        ))
                
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('Aubio')
        ))
        
    for s, p, o in aug.triples((audict[k]['sub'], None, None)):
        if o != RDFS.Resource:
            afgr.add((URIRef(id), p, o))


############# sMIRk ###############
path = "/Users/alo/MusicOntology/features/rdf/af-smirk.rdf"
smg = Graph()
smg.parse(path)

smdict = {}

for s, p, o in smg.triples((None, None, RDFS.Resource)):
    smname = s.split('/')[-1]
    smdict[smname] = {'score': 0, 'name':"", 'sub': s}
    
    score = 100

    for s, p, o in current.triples((None, None, RDFS.Resource)):                                    
        for cs, cp, name in current.triples((s, URIRef('http://sovarr.c4dm.eecs.qmul.ac.uk/features/feature'), None)):
            m = StringMatcher()
            m.set_seqs(Literal(smname), name)
            sm = float(m.distance()) / ((len(smname) + len(name)) / 2.0)
            if sm < score:
                smdict[smname]['score'] = 1.0 - sm
                smdict[smname]['name'] = name
                score = sm
            
    if smdict[smname]['score'] < 0.75:                
        for k in abbr.keys():
            if abbr[k] == smname:
                smdict[smname]['score'] = 1.0
                smdict[smname]['name'] = k
    
for k in smdict.keys():
    if smdict[k]['score'] > 0.77:
        name = smdict[k]['name']
        id = local + (name.replace(' ','').replace('-',''))
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('sMIRk')
        ))
    else:
        id = local + (k.replace(' ','').replace('-',''))
        afgr.add(( URIRef(id),        
            URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
            URIRef(u'http://www.w3.org/2000/01/rdf-schema#Resource')  
        ))
    
        afgr.add(( 
            URIRef(id), 
            URIRef(local + 'feature'), 
            Literal(split_uppercase(k)) 
        ))
                
        afgr.add(( 
            URIRef(id),
            URIRef(local + 'computedIn'),
            Literal('sMIRk')
        ))
        
    for s, p, o in smg.triples((smdict[k]['sub'], None, None)):
        if o != RDFS.Resource:
            afgr.add((URIRef(id), p, o))



afgr.serialize('/Users/alo/MusicOntology/features/docfeatures.n3', format='n3')
afgr.serialize('/Users/alo/MusicOntology/features/docfeatures.rdf')